Detail information of GWHGAAEX005909/evm.TU.scaffold_173.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 4.00E-135 | FOG: PPR repeat |
| nr | gi|743799945|ref|XP_010925678.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g33680-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9SS83|PP220_ARATH | 1.00E-135 | Pentatricopeptide repeat-containing protein At3g09040, mitochondrial (Precursor) |
| trEMBL | tr|W9QRX9|W9QRX9_9ROSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:EXB52055.1} |
| TAIR | AT3G09040 | 4.00E-135 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000172 | 1680309 | 1682690 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005909
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 80 | 101 | 0.072 |
| PF13041.5 | PPR_2 | 109 | 151 | 3.90E-08 |
| PF01535.19 | PPR | 183 | 207 | 0.4 |
| PF01535.19 | PPR | 214 | 239 | 0.62 |
| PF01535.19 | PPR | 313 | 341 | 0.11 |
| PF13041.5 | PPR_2 | 410 | 458 | 5.50E-09 |
| PF01535.19 | PPR | 515 | 541 | 2.90E-05 |
| PF01535.19 | PPR | 589 | 612 | 0.00056 |
| PF13041.5 | PPR_2 | 613 | 661 | 4.90E-12 |
| PF01535.19 | PPR | 688 | 710 | 0.31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.570 |
| SRR2545915 | Juvenile tuber | 16.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.120 |
| SRR5643514 | five period of Gastrodia elata | 10.900 | |
| SRR5643515 | five period of Gastrodia elata | 8.920 | |
| SRR5643524 | five period of Gastrodia elata | 9.570 | |
| SRR5643525 | five period of Gastrodia elata | 8.850 | |
| SRR5643528 | five period of Gastrodia elata | 8.070 | |
| SRR5643658 | five period of Gastrodia elata | 10.800 | |
| SRR5643659 | five period of Gastrodia elata | 11.770 | |
| SRR5643660 | five period of Gastrodia elata | 14.750 | |
| SRR5643661 | five period of Gastrodia elata | 12.450 | |
| SRR5643662 | five period of Gastrodia elata | 10.480 | |
| SRR5643663 | five period of Gastrodia elata | 12.340 | |
| SRR5643664 | five period of Gastrodia elata | 11.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.28 |
| Juven | Juvenile tuber | 12.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.43 | |
| Mother_Juven | Mother tuber of Juvenile | 7.92 |