Gene detail

Detail information of GWHGAAEX005914/evm.TU.scaffold_173.50

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383454866\|ref\|YP_005368855.1\|	4.00E-127	ATP-dependent helicase [Corallococcus coralloides DSM 2259]
KOG	KOG0922	0	DEAH-box RNA helicase
nr	gi\|743770578\|ref\|XP_010915577.1\|	0	PREDICTED: probable ATP-dependent RNA helicase DHX35 [Elaeis guineensis]
Swissprot	tr\|Q38953\|DHX8_ARATH	0	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|A0A067GGK6\|A0A067GGK6_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO77780.1}
TAIR	HS20544129	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000172	1934278	2003178	+

Transcript Sequence
>GWHTAAEX005914 CGATCATCTAAGCAAGCCCCTCAAATTTCCCCAAAACTCGGCCGTGCCTGAGCCCATTACAGAAACTATGTCTCAGTTCTGGAAGCCTGGAACTGAGCGCCCTCGAGCGTGCCTTGTTGACGATGAGGAAGGCGGTGTTCTCTTTTGTTCGACTTCTTCCTCAAGCTATGGTTACGCCAACTTGGAAAGGCAGAGACAAAAGCTACCCGTGTTTAAATACCGAACTGCCATCCTGTATCTGGTTGAGCACCATGGCACCACTATAATTGTTGGCGAAACTGGTAGTGGAAAGACCACCCAAATCCCTCAGTATCTAAATGAGGCAGGTTGGGCTGAGGGTGGTAGGATCATAGCTTGCACACAGCCACGACGGTTGGCTGTACAGTCAGTTGCTTCCCGAGTAGCTGAAGAGATGGGGGTCAAAGTTGGTGAAGAGGTTGGATATACCATCCGTTTTGAAGATAAAACTTTTCAGGGTGTGACTAAGATTAAGTTTCTCACAGATGGGGTTTTGCTAAGAGAGATGATGGATGACCCACTGTTGACCAAGTATAGTGTTATAATGGTAGATGAGGCTCATGAAAGATCTATCTCCACTGATATGCTTTTAGGCCTTTTAAAGAAGATACAGCGTCGTAGACCTGAGCTGCGTTTAATAATTTCATCTGCAACAATAAATGCAGAGTCAATGTCAAATTATTTTCAAACTAGAAAGAAGGATGGACATGCAACTGAAGATAATAGCTTTAAGACAGAGCCTTCCATTCTTTCCGTGGAAGGAAAAGGGTATCCTGTGGAAATTCTCTATGTCCAGGAGGCTGTCTCTGATTATTTGCAATCTGCTGTGGATACCGTGCGCTTAATTCATGAGAAGGAGCCAGTTGGCGATGTTCTAGTGTTTCTTACAGGTCAAGATGATATCGATGATGCTGTGCAGAAACTTGTCGAGGAGGCAAGAGATGGAGCCAGCCGCTTTTCTGGGCTTTTGGTTTTGCCGCTTTACTCTGGTCTCTCACGGTCAGATCAGGATCTCATATTTGCTCCTACCCCAAAGGGAAAAAGGAAAGTTGTCGTATCTACCAACATTGCTGAGACATCACTTACATTAGAGGGGGTGGTTTATGTTGTGGACTGTGGATTCTCAAAGCAGCGCTTTTATAACCCTATTTCTGACATTGAAAATTTGGTGGTGGCACCGATATCAAAAGCTTCTGCAAGACAACGAGCTGGAAGAGCTGGGAGGGTACGCTCAGGAAAATGCTTTAGGCTGTATACTGAAGATTATTTTGCTAAGGAAATGCCAGCTGACGGAATTCCTGAGATGCAAAGGTCAAATCTTGTTTCTTCTGTAATACAACTAAAAGCTCTAGGCATTGATAATATCTTAGGCTTTGGCTGGCTAGATTCTCCTCCACCGGAGTCAATGATTAGAGCGCTTGAGGTTCTTTACTCTCTTGGGATCCTTGATGATGATGCTAAACTCACATCACCTTGTGGCTTTCAAGTTGCTGAAATACCACTAGATCCTATGATCTCCAAAATGATCATAGCAGCTGAAACGCTTGGATGTTTGGAGGAGGTGCTTACTATTGCAGCCATTCTTTCTGTTCAGTCCATCTGGGTTTCTGTAAGAGGAAAGCACAAAGGCCTTGATGAAGTGAAGTTGCGATTTGCTGCTGCTGAGGGTGATCATATTACTCATTTGAATGTATATAAAGGTTTTCTTCAGTCTGGAAGGTCTTCACAATGGTGTTACAAAAACTTCATAAACTACCATGCTATGAAGAAGGTTGTTGATACGAGAGAACAACTTATCAGGCTACTGAGGCGGCTTGGCTTAGTTCCAAAATCTAGTGAAGGAGATACACAGACAATTAGAAAAGCTGTTCTTGCTGGTTTTTTCTCCCATGCATGCCAGTTGGAAGAATACAGTCAAAACGGCATGTACAAAACAGTTAGAGGCTCCCAGGAAGTGTACATTCATCCGTCATCTGTATTGTTTAGAGTAAACCCAAAGTGGGTGGTCTACCATTCTCTGGTCTTCACAGACAGGCATTATATGCACAATGTCATTGCCGTCGACCCAACCTGGCTCATTGAGTCTGCGCCACATTTCTACCAACTGAAGACACCGAATCCTGCGCTCTTCTGAAGCTCACTTGATAGAGGAGCTTCTGCTCCTTTTGCTATTTTCCTGTCAATTTTGAAAGGGGTTTGTTTGCTGGCAGTATGGATTCATTCATTGGCAATGTTTCTTAGATGCCAAACTTTCAGTAGAACAATGGAGTTTAGAGTGCCAAATTATTGATCTATTTGATGATGAAAACCTGTAGTTAGAGATGACTTAAATAATGTATTATATTACAAATTAATATATTTGTGAATTATGAAATTGTTATGTAAATAATCAACTTATGCGTGTGAATAGATGCCAAACCTTCATCACCGGCTGTTAACTCAAGTTCAGATATGTGGACTCTAAATTGATTTGTTAGCA

Network for GWHGAAEX005914

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13401.5	AAA_22	61	187	2.80E-06
PF00271.30	Helicase_C	264	393	1.50E-14
PF04408.22	HA2	456	544	3.90E-16
PF07717.15	OB_NTP_bind	603	682	1.00E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0004386	Molecular Function	helicase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.930
SRP064423	SRR2545915	Juvenile tuber	20.980
SRP108465	SRR5643513	five period of Gastrodia elata	17.210
	SRR5643514	five period of Gastrodia elata	15.240
	SRR5643515	five period of Gastrodia elata	18.660
	SRR5643524	five period of Gastrodia elata	13.410
	SRR5643525	five period of Gastrodia elata	19.320
	SRR5643528	five period of Gastrodia elata	14.400
	SRR5643658	five period of Gastrodia elata	16.740
	SRR5643659	five period of Gastrodia elata	20.510
	SRR5643660	five period of Gastrodia elata	21.850
	SRR5643661	five period of Gastrodia elata	21.970
	SRR5643662	five period of Gastrodia elata	20.420
	SRR5643663	five period of Gastrodia elata	22.500
	SRR5643664	five period of Gastrodia elata	22.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.570
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.330
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.170
SRP279888	Gastro	Gastrodia elata tuber	28.81
	Juven	Juvenile tuber	27.48
	Mother_Gastro	Mother tuber of Gastrodia elata	15.04
	Mother_Juven	Mother tuber of Juvenile	23.54