Detail information of GWHGAAEX005915/evm.TU.scaffold_173.51
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743798567|ref|XP_010925270.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Elaeis guineensis] |
| Swissprot | tr|O82380|PP175_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g29760, chloroplastic (Precursor) |
| trEMBL | tr|F6HXG1|F6HXG1_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB59631.1} |
| TAIR | AT2G29760 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000172 | 2003333 | 2005881 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005915
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 66 | 113 | 4.40E-10 |
| PF01535.19 | PPR | 170 | 198 | 4.00E-06 |
| PF01535.19 | PPR | 241 | 266 | 0.00024 |
| PF01535.19 | PPR | 270 | 294 | 0.015 |
| PF13041.5 | PPR_2 | 300 | 348 | 7.80E-08 |
| PF01535.19 | PPR | 380 | 404 | 8.40E-05 |
| PF13041.5 | PPR_2 | 407 | 455 | 1.90E-07 |
| PF01535.19 | PPR | 483 | 503 | 0.42 |
| PF14432.5 | DYW_deaminase | 581 | 705 | 1.90E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.320 |
| SRR2545915 | Juvenile tuber | 1.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.190 |
| SRR5643514 | five period of Gastrodia elata | 3.630 | |
| SRR5643515 | five period of Gastrodia elata | 3.590 | |
| SRR5643524 | five period of Gastrodia elata | 3.380 | |
| SRR5643525 | five period of Gastrodia elata | 4.300 | |
| SRR5643528 | five period of Gastrodia elata | 3.370 | |
| SRR5643658 | five period of Gastrodia elata | 3.310 | |
| SRR5643659 | five period of Gastrodia elata | 2.860 | |
| SRR5643660 | five period of Gastrodia elata | 3.750 | |
| SRR5643661 | five period of Gastrodia elata | 3.690 | |
| SRR5643662 | five period of Gastrodia elata | 3.390 | |
| SRR5643663 | five period of Gastrodia elata | 2.590 | |
| SRR5643664 | five period of Gastrodia elata | 2.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.26 |
| Juven | Juvenile tuber | 2.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.43 | |
| Mother_Juven | Mother tuber of Juvenile | 3.52 |