Detail information of GWHGAAEX005918/evm.TU.scaffold_174.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4400 | 2.00E-63 | E3 ubiquitin ligase interacting with arginine methyltransferase |
| nr | gi|743775020|ref|XP_010917883.1| | 2.84E-141 | PREDICTED: zinc finger CCHC domain-containing protein 7-like [Elaeis guineensis] |
| Swissprot | tr|O65639|CSP1_ARATH | 5.00E-14 | Cold shock protein 1 |
| trEMBL | tr|F6HA74|F6HA74_VITVI | 9.00E-111 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB49178.1} |
| TAIR | AT3G43590 | 2.00E-63 | zinc knuckle (CCHC-type) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000176 | 94714 | 111394 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005918
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00098.22 | zf-CCHC | 168 | 183 | 0.00012 |
| PF14392.5 | zf-CCHC_4 | 189 | 203 | 0.00055 |
| PF00098.22 | zf-CCHC | 209 | 223 | 0.0015 |
| PF14392.5 | zf-CCHC_4 | 235 | 250 | 6 |
| PF00098.22 | zf-CCHC | 316 | 331 | 0.00077 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 53.410 |
| SRR2545915 | Juvenile tuber | 51.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 44.350 |
| SRR5643514 | five period of Gastrodia elata | 44.350 | |
| SRR5643515 | five period of Gastrodia elata | 44.130 | |
| SRR5643524 | five period of Gastrodia elata | 45.800 | |
| SRR5643525 | five period of Gastrodia elata | 58.030 | |
| SRR5643528 | five period of Gastrodia elata | 48.000 | |
| SRR5643658 | five period of Gastrodia elata | 63.880 | |
| SRR5643659 | five period of Gastrodia elata | 46.770 | |
| SRR5643660 | five period of Gastrodia elata | 47.950 | |
| SRR5643661 | five period of Gastrodia elata | 48.710 | |
| SRR5643662 | five period of Gastrodia elata | 49.420 | |
| SRR5643663 | five period of Gastrodia elata | 53.620 | |
| SRR5643664 | five period of Gastrodia elata | 55.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 47.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 56.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 51.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 51.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 50.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 55.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 49.510 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 43.760 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 45.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 43.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 48.770 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 48.770 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 56.37 |
| Juven | Juvenile tuber | 63.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.00 | |
| Mother_Juven | Mother tuber of Juvenile | 70.22 |