Detail information of GWHGAAEX005921/evm.TU.scaffold_174.8
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428200845|ref|YP_007079434.1| | 4.00E-66 | 4-hydroxyphenylpyruvate dioxygenase [Pleurocapsa sp. PCC 7327] |
| KOG | KOG0638 | 0 | 4-hydroxyphenylpyruvate dioxygenase |
| nr | gi|695062162|ref|XP_009419542.1| | 0 | PREDICTED: 4-hydroxyphenylpyruvate dioxygenase [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P93836|HPPD_ARATH | 0 | 4-hydroxyphenylpyruvate dioxygenase |
| trEMBL | tr|C5XVJ3|C5XVJ3_SORBI | 0 | 4-hydroxyphenylpyruvate dioxygenase {ECO:0000256|PIRNR:PIRNR009283} |
| TAIR | AT1G06570 | 0 | phytoene desaturation 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000176 | 214961 | 218232 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005921
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00903.24 | Glyoxalase | 211 | 368 | 8.80E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00457 | HPD, hppD | Metabolic pathways | map01100 |
| Tyrosine metabolism | map00350 | ||
| Phenylalanine metabolism | map00360 | ||
| Ubiquinone and other terpenoid-quinone biosynthesis | map00130 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0009072 | Biological Process | aromatic amino acid family metabolic process |
| GO:0016701 | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen |
| GO:0003868 | Molecular Function | 4-hydroxyphenylpyruvate dioxygenase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.750 |
| SRR2545915 | Juvenile tuber | 16.680 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 50.100 |
| SRR5643514 | five period of Gastrodia elata | 84.810 | |
| SRR5643515 | five period of Gastrodia elata | 55.010 | |
| SRR5643524 | five period of Gastrodia elata | 85.210 | |
| SRR5643525 | five period of Gastrodia elata | 49.590 | |
| SRR5643528 | five period of Gastrodia elata | 42.430 | |
| SRR5643658 | five period of Gastrodia elata | 54.080 | |
| SRR5643659 | five period of Gastrodia elata | 23.650 | |
| SRR5643660 | five period of Gastrodia elata | 23.980 | |
| SRR5643661 | five period of Gastrodia elata | 34.870 | |
| SRR5643662 | five period of Gastrodia elata | 17.140 | |
| SRR5643663 | five period of Gastrodia elata | 19.210 | |
| SRR5643664 | five period of Gastrodia elata | 17.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 66.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 54.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 39.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 42.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 51.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 70.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 70.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.53 |
| Juven | Juvenile tuber | 37.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 33.41 | |
| Mother_Juven | Mother tuber of Juvenile | 31.21 |