Detail information of GWHGAAEX005925/evm.TU.scaffold_174.18


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|226940758|ref|YP_002795832.1|1.00E-144phosphoserine aminotransferase [Laribacter hongkongensis HLHK9]
KOGKOG27900Phosphoserine aminotransferase
nrgi|743823963|ref|XP_010932656.1|0PREDICTED: phosphoserine aminotransferase 2, chloroplastic-like [Elaeis guineensis]
Swissprottr|Q96255|SERB1_ARATH0Phosphoserine aminotransferase 1, chloroplastic (Precursor)
trEMBLtr|F6H8F3|F6H8F3_VITVI0Phosphoserine aminotransferase {ECO:0000256|RuleBase:RU004505}
TAIRAT4G356300phosphoserine aminotransferase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000176590994592241+
Transcript Sequence

Network for GWHGAAEX005925

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00266.18Aminotran_5564031.60E-51
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00831serC, PSAT1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Methane metabolismmap00680
Pyrimidine metabolismmap00240
Cysteine and methionine metabolismmap00270
Vitamin B6 metabolismmap00750

Gene Ontology

GO term OntologyName
GO:0006564Biological ProcessL-serine biosynthetic process
GO:0003824Molecular Functioncatalytic activity
GO:0004648Molecular FunctionO-phospho-L-serine:2-oxoglutarate aminotransferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms58.870
SRR2545915Juvenile tuber72.130
SRP108465SRR5643513five period of Gastrodia elata77.220
SRR5643514five period of Gastrodia elata71.190
SRR5643515five period of Gastrodia elata81.060
SRR5643524five period of Gastrodia elata66.450
SRR5643525five period of Gastrodia elata57.500
SRR5643528five period of Gastrodia elata51.170
SRR5643658five period of Gastrodia elata84.650
SRR5643659five period of Gastrodia elata116.450
SRR5643660five period of Gastrodia elata111.320
SRR5643661five period of Gastrodia elata129.860
SRR5643662five period of Gastrodia elata142.480
SRR5643663five period of Gastrodia elata130.640
SRR5643664five period of Gastrodia elata143.650
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_198.290
SRR6049655Rhizomagastrodiae_C368-T10_good_1108.400
SRR6049656Rhizomagastrodiae_C368-T07_good_191.640
SRR6049657Rhizomagastrodiae_C368-T07_good_183.070
SRR6049658Rhizomagastrodiae_C368-T04_good_186.070
SRR6049659Rhizomagastrodiae_C368-T04_good_172.100
SRR6049660Rhizomagastrodiae_C368-T01_good_178.300
SRR6049661Rhizomagastrodiae_C368-T04_good_186.050
SRR6049662Rhizomagastrodiae_C368-T01_good_1104.290
SRR6049663Rhizomagastrodiae_C368-T01_good_184.500
SRR6049664Rhizomagastrodiae_C368-T10_good_178.410
SRR6049665Rhizomagastrodiae_C368-T10_good_178.410
SRP279888GastroGastrodia elata tuber 106.22
JuvenJuvenile tuber116.80
Mother_GastroMother tuber of Gastrodia elata 32.96
Mother_JuvenMother tuber of Juvenile 73.31