Gene detail

Detail information of GWHGAAEX005931/evm.TU.scaffold_174.24

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672128826\|ref\|XP_008787904.1\|	PREDICTED: protein OBERON 3-like [Phoenix dactylifera]
Swissprot	tr\|Q94B71\|OBE3_ARATH	Protein OBERON 3
trEMBL	tr\|M0RJ61\|M0RJ61_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P17860_001}
TAIR	AT1G14740	Protein of unknown function (DUF1423)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000176	844419	857504	-

Transcript Sequence
>GWHTAAEX005931 TGATTTTTGAATTGCTGACGACGGCGGCGGAAGATGCACAGCAAATGGCCATCATGGAGGTGCGCAAAGGAGAAATGTATGGCATTTAAAAGAACCTATTCGGAAAGAAAAGTCCACGCTCCCACCGCGTAATGGTGCGAGTTGTAGATGCCAAACGTCGAAGTGTAGGAGGCTCAATCAAGCTACTGAAGGTCACAGCTTGAGGCCTGAGATTCAAACAGTAGAAGAAACCCTTCTATTTCGTCGTTCTACAGTTCACAGTCTCAGGCAGGCGCCATGGTCTCAGACGCTGGCTCACCTCCCAACGCATCCCGTCTCCAGTCCGACATCGCTCAATCAGACTCTGTATCACTCGATCTTCAAAACCCTATTCCAAATTCGCATCCTCCCGAAAAGCTGGCGGCCATCTCAGGCGGAGAGCTCACTCTCAGCTATCTTTGCGAGAATCCCAAGCTCGGTATCGTTCCCGATAGAGAACCTGCTGCCGTTTCTGCCACCTCTACGGGTGCTGGATGCGGCGATCTCATTCTTTCGCTTGAGAAACCGCGTGCCAAGGGCAAGGAGGTTGCCGCTACCACCTCTGGAGGCGTTGGGGCTGATGAAGAGCGCTGGGTTGAAAGGGATTTTCTCCAGTTAAAGGGCCTCGCCGGAAGCAAGCGGGAGGGGGCGATGGATCCTGTCAAGTCTGATGGACACGACAAGAAGGTAAAGATAGAACCCCTCAACCTTACCCTATCGCCGCCTAACCTTTCTCTTTCACTCAATTCTTCGATTCCCTTATCCAACGGCCTCCCTCCGATACCTGAGCGCCAAGACACGGCAGCTGCCGTCACCATGCCTGCTATTAATCCGGCATCTCTTGCCAGGACTTTCAGCAACAATACTCGGGCGACGAATTCTGAAGATTTCACGCAGTCTCTTTCCTATTCTTGTTCTGTCCCCTTCTCCCACAACCCTAGCTGCTCACTAACTCGTAACTCGACCGAGAATTACGATGTTTCTAGGGATAACGATCAGATGTGGTATTGTGGAGCTGGGGAAGGGACAAATGGCTCCGTTCATAGCCGTTTCCGGCCAATAGGTGATGGAAATAGCATCACTTTCTCAAATCATGGTGGTTTTGCTCACATGAGTTGCAGTAACAAAGACAACAATAACAACACTAATGGTATCTATAAAGTCAGCAACGTAGCCGATGATATCTCTTTCTACCCGTCTGAACTGCCTGCTAGGCAGGGGAGAGCTCATGCTACCGCTGTAAGTGCAGATAATGGGAGAAATGCCATGCTTTCTAGGCCAGATAGGGTGTTGAAAGAAATAGTTTCGGAGATGGTTCCTCTAATGGCACAAAGATTGCAAGAAATGCCAAGCAGCTCAATTGAGGCAGTAAAAGAATATTTGAGGACTCTGATGGATTTGCCTGAGAAGGAGGAGTTTAATTGCCTCCAAAGGAAGCTAGACAGGAGGTCTGACCTCACTTCTGAAAACCTTTTAAAATCTCACAGGGTGCAGCTTGAAATAATGGTTGCAATAAAAACTAGCATAGTAGGCTTTTTGTCTTTAAAGATCCGTATACCCACCACTGAGTTGATGGAGATATTCCTATTGACAAGATGTAAGAACCTGAGCTGCAAGAGCTTGCTTCCTGTTGATGACTGTGATTGCAAACTATGCACAAATAACAAGGGCTTTTGTAGTGCCTGCATGTGCCCGATTTGTTTTAAATTTGATTGCGCTTTAAACACATGTAGTTGGGTTGGATGTGATGTTTGCTCACATTGGTGCCATGCGATTTGTGGGATTCAGAAGAATCTCATTAGACCTGGGCCCAGCTTGAAAGGTGGTGGCACAATGACAGAAATGCAGTTCTATTGCCCTGGATGTGATCACACTTCTGAAATGTTTGGTTTTGTCAAAGAAGTTTTTATGTGCTGCGCAAAAGGTTGGGGCCTGGAGACCCTGATGAAGGAACTGGAGTGTGTTAGGATGATTTTCCGTGAAAGTCAGGATCTTGAAGGCAAGGAATTGGAACGGAAGGCAGACGAGATGCTTAACAAGGTAGGGAAGAAGCAAATTTCTGCACTGGATGCATGCAGTGGCATGTTGCAGTTCTTCAAATATGGCGTTTCGGATCTCTCCGTCACCGGAAGTTCTAAGAACAAGTTTGCAGCTCAGAGCAGCCAGCAGGAGAGCATGGTACCTCTTCCGCCGGCTGTGGCAATGGCTTCGCCAAAATTAGGGTTTACTTCGAAGCCGAGTTCTTCCATTTTCGATCCCGTGGATGTGTTGAAAATTGAGGCGTCCCCAAAGCCTCTTGCCGCAATTGAACCAAAACTAGTCGTGCCTAAAGACGACGGCTTCCAGAGCCTGGACACGATCGTTCGGTTCAAGGAGGCAGAGGCGAAGCTGTTCCAAAGGCTAGCCGATGAAGCGCGAAAGGAGATGGAAAGCTACCGGCAGATAGTCTGCGCGAAGACGGAGAAGCTGGAGGAGGAATACGCCTCGAGGCTCGCAAAACTCTGCCTGCAGGAAACCGAGGAGCGACGCAGGAAGAAGCTGGAGGAGCTCAAGTACCACGAAAACTCCCACTGCGACTACCAGAAGATGAAGATCAGGATGCAGTCTGAGATAGCAAGCTTGCTCGAAAGAATGGAGGCGACCAGGAAGCAATGGGCATGAAATGCGATTTCTTTCTCGACTCTATATTTCGGTCGTCTATGATTTCCGAGCTTGAAAATGGCAACAATTTGCGCAAAACCTAGCGGTTGGGATTCGTTTTCTATGTTTTCTGCTGTTTCTCATGTAAAAAGGCTATGTTATTTTCTTCGATTGATGATAAAAACTCTTCCTTTTTTTTTGTTCATTAGCTCTTATTTATTTATTTTTATTTTCTTAAAATTGGCTTTCTTGATGAGTGGTGAGTACTCTAATTACAAATAGTTCACATCTCTTAAGAGCTTCTTTGCTTCCCTTCAGTATAATTCGTCCATTGTTGTCAATACTGTCTCGGCCTCATCATCTAGCATAGAAGGCTTAGATGGCTTCAAATCTTTGACATTATAATTGAGTTCAACTGCAAAAGGTTTGTAATCTCAACACTATATTGCTATTCCTTGTGATTTTCAATGAGCC

Network for GWHGAAEX005931

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07227.10	PHD_Oberon	447	570	8.10E-34
PF16312.4	Oberon_cc	690	789	7.30E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	83.610
SRP064423	SRR2545915	Juvenile tuber	58.660
SRP108465	SRR5643513	five period of Gastrodia elata	53.420
	SRR5643514	five period of Gastrodia elata	40.180
	SRR5643515	five period of Gastrodia elata	51.280
	SRR5643524	five period of Gastrodia elata	40.750
	SRR5643525	five period of Gastrodia elata	50.270
	SRR5643528	five period of Gastrodia elata	47.910
	SRR5643658	five period of Gastrodia elata	49.340
	SRR5643659	five period of Gastrodia elata	48.240
	SRR5643660	five period of Gastrodia elata	49.760
	SRR5643661	five period of Gastrodia elata	54.310
	SRR5643662	five period of Gastrodia elata	47.550
	SRR5643663	five period of Gastrodia elata	41.120
	SRR5643664	five period of Gastrodia elata	51.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	60.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	57.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	53.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	70.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	61.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	74.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	70.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	58.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	47.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	64.910
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	48.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	48.290
SRP279888	Gastro	Gastrodia elata tuber	51.38
	Juven	Juvenile tuber	87.60
	Mother_Gastro	Mother tuber of Gastrodia elata	48.53
	Mother_Juven	Mother tuber of Juvenile	64.71