Detail information of GWHGAAEX005934/evm.TU.scaffold_174.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0627 | 2.00E-72 | Heat shock transcription factor |
| nr | gi|672114164|ref|XP_008775697.1| | 2.88E-107 | PREDICTED: heat stress transcription factor A-1-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q84T61|HSFA1_ORYSJ | 3.00E-81 | Heat stress transcription factor A-1 |
| trEMBL | tr|I1H7W3|I1H7W3_BRADI | 9.00E-82 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G69407.1} |
| TAIR | AT4G17750 | 2.00E-72 | heat shock factor 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000176 | 1014263 | 1025988 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005934
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00447.16 | HSF_DNA-bind | 24 | 113 | 1.80E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.430 |
| SRR2545915 | Juvenile tuber | 7.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.660 |
| SRR5643514 | five period of Gastrodia elata | 4.980 | |
| SRR5643515 | five period of Gastrodia elata | 6.990 | |
| SRR5643524 | five period of Gastrodia elata | 5.300 | |
| SRR5643525 | five period of Gastrodia elata | 11.640 | |
| SRR5643528 | five period of Gastrodia elata | 14.880 | |
| SRR5643658 | five period of Gastrodia elata | 10.470 | |
| SRR5643659 | five period of Gastrodia elata | 11.350 | |
| SRR5643660 | five period of Gastrodia elata | 11.910 | |
| SRR5643661 | five period of Gastrodia elata | 13.940 | |
| SRR5643662 | five period of Gastrodia elata | 15.250 | |
| SRR5643663 | five period of Gastrodia elata | 12.070 | |
| SRR5643664 | five period of Gastrodia elata | 10.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.760 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.07 |
| Juven | Juvenile tuber | 6.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.08 | |
| Mother_Juven | Mother tuber of Juvenile | 9.09 |