Gene detail

Database	Orthologs	E value	Annotation
KOG	KOG4197	9.00E-54	FOG: PPR repeat
nr	gi\|590594566\|ref\|XP_007017888.1\|	8.70E-63	Pentatricopeptide repeat (PPR) superfamily protein [Theobroma cacao]
Swissprot	tr\|Q9LNU6\|PPR53_ARATH	3.00E-54	Pentatricopeptide repeat-containing protein At1g20230
trEMBL	tr\|A0A061FDX3\|A0A061FDX3_THECC	3.00E-63	Pentatricopeptide repeat (PPR) superfamily protein {ECO:0000313\|EMBL:EOY15113.1}
TAIR	AT1G20230	9.00E-54	Pentatricopeptide repeat (PPR) superfamily protein

Scaffold	Start	End	Strand
GWHAAEX00000176	1522246	1522707	-

Transcript Sequence
>GWHTAAEX005940 ATGAAGAACACAGTGTCGTGGAATGCAATGCTGGGAGGTTATGCCATGTATGGAAGAGCGAAGGAAGCTATTGATTTTTTCTATTTGATGGAAGTGAGCAGCAATGAGAAGCCCGACTTCATAAGCTTCACTTGCATTTTGTCATCCTGCAGTCAGGCAGGATTGAAAGAGGAAGGGTGGAAGTTTTTCCATAGGATGGAGAGGGAATATGGAATTGCTGCGAGGATGGAGCATTATGCATGCATGGTGAACCTCTTGAGTCGAGCGGGAAAGCTTGATGAATCTTACAAATTTATTGGGCAGATGCCATTTTACCCTGATGCTTGCGTTTGGGGGGCACTTCTTAGTGCATGCAGGGTGCATGGCAATGTGAGACTTGCTGAAATTGCTGCTGAAAATCTATTCAAACTTGAACCTGTGGAGATTATTGGTGAAGGATTGTGTTCTGTTGCTCATTGCTGA

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13041.5	PPR_2	2	50	8.40E-08
PF01535.19	PPR	79	102	0.082

Protein Sequence

Gene family	subfamily
--	--

KO	Enzyme	pathway	mapID
--	--	--	--

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	0.880
	SRR5643514	five period of Gastrodia elata	0.450
	SRR5643515	five period of Gastrodia elata	0.810
	SRR5643524	five period of Gastrodia elata	0.240
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.940
	SRR5643660	five period of Gastrodia elata	1.040
	SRR5643661	five period of Gastrodia elata	1.830
	SRR5643662	five period of Gastrodia elata	2.130
	SRR5643663	five period of Gastrodia elata	0.590
	SRR5643664	five period of Gastrodia elata	1.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.220
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.220
SRP279888	Gastro	Gastrodia elata tuber	0.64
	Juven	Juvenile tuber	1.11
	Mother_Gastro	Mother tuber of Gastrodia elata	0.00
	Mother_Juven	Mother tuber of Juvenile	0.66