Detail information of GWHGAAEX005941/evm.TU.scaffold_174.43


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG26593.00E-135LisH motif-containing protein
nrgi|743850728|ref|XP_010939957.1|5.57E-153PREDICTED: glucose-induced degradation protein 8 homolog [Elaeis guineensis]
trEMBLtr|B9S5Y6|B9S5Y6_RICCO1.00E-149Protein C20orf11, putative {ECO:0000313|EMBL:EEF40895.1}
TAIRAT1G611503.00E-135LisH and RanBPM domains containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017615430211555971+
Transcript Sequence

Network for GWHGAAEX005941

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08513.10LisH43699.10E-09
PF10607.8CLTH802225.90E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.140
SRR2545915Juvenile tuber30.780
SRP108465SRR5643513five period of Gastrodia elata50.570
SRR5643514five period of Gastrodia elata58.860
SRR5643515five period of Gastrodia elata55.000
SRR5643524five period of Gastrodia elata60.790
SRR5643525five period of Gastrodia elata41.660
SRR5643528five period of Gastrodia elata40.430
SRR5643658five period of Gastrodia elata37.950
SRR5643659five period of Gastrodia elata50.370
SRR5643660five period of Gastrodia elata49.230
SRR5643661five period of Gastrodia elata55.340
SRR5643662five period of Gastrodia elata49.000
SRR5643663five period of Gastrodia elata45.010
SRR5643664five period of Gastrodia elata48.060
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_130.440
SRR6049655Rhizomagastrodiae_C368-T10_good_131.390
SRR6049656Rhizomagastrodiae_C368-T07_good_138.620
SRR6049657Rhizomagastrodiae_C368-T07_good_127.430
SRR6049658Rhizomagastrodiae_C368-T04_good_132.360
SRR6049659Rhizomagastrodiae_C368-T04_good_126.640
SRR6049660Rhizomagastrodiae_C368-T01_good_126.190
SRR6049661Rhizomagastrodiae_C368-T04_good_128.430
SRR6049662Rhizomagastrodiae_C368-T01_good_140.380
SRR6049663Rhizomagastrodiae_C368-T01_good_138.020
SRR6049664Rhizomagastrodiae_C368-T10_good_152.850
SRR6049665Rhizomagastrodiae_C368-T10_good_152.850
SRP279888GastroGastrodia elata tuber 51.84
JuvenJuvenile tuber45.31
Mother_GastroMother tuber of Gastrodia elata 41.03
Mother_JuvenMother tuber of Juvenile 38.97