Detail information of GWHGAAEX005945/evm.TU.scaffold_174.46
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|344202164|ref|YP_004787307.1| | 5.00E-19 | hypothetical protein [Muricauda ruestringensis DSM 13258] |
| nr | gi|672190718|ref|XP_008775322.1| | 0 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q06BH3|SRF1_ARATH | 7.00E-172 | Protein STRUBBELIG-RECEPTOR FAMILY 1 (Precursor) |
| trEMBL | tr|M0RVI3|M0RVI3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P26030_001} |
| TAIR | AT2G20850 | 5.00E-174 | STRUBBELIG-receptor family 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000176 | 1601597 | 1653534 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005945
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07714.16 | Pkinase_Tyr | 517 | 778 | 5.70E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-V |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.090 |
| SRR2545915 | Juvenile tuber | 7.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.280 |
| SRR5643514 | five period of Gastrodia elata | 3.310 | |
| SRR5643515 | five period of Gastrodia elata | 1.860 | |
| SRR5643524 | five period of Gastrodia elata | 3.760 | |
| SRR5643525 | five period of Gastrodia elata | 0.930 | |
| SRR5643528 | five period of Gastrodia elata | 0.870 | |
| SRR5643658 | five period of Gastrodia elata | 0.930 | |
| SRR5643659 | five period of Gastrodia elata | 0.890 | |
| SRR5643660 | five period of Gastrodia elata | 0.420 | |
| SRR5643661 | five period of Gastrodia elata | 1.010 | |
| SRR5643662 | five period of Gastrodia elata | 0.890 | |
| SRR5643663 | five period of Gastrodia elata | 0.640 | |
| SRR5643664 | five period of Gastrodia elata | 0.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.21 |
| Juven | Juvenile tuber | 0.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.51 | |
| Mother_Juven | Mother tuber of Juvenile | 0.50 |