Detail information of GWHGAAEX005947/evm.TU.scaffold_174.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG30885.00E-157Secretory carrier membrane protein
nrgi|743761878|ref|XP_010905287.1|4.12E-167PREDICTED: secretory carrier-associated membrane protein 2-like [Elaeis guineensis]
Swissprottr|Q7F613|SCAM2_ORYSJ3.00E-159Secretory carrier-associated membrane protein 2
trEMBLtr|B3TLU6|B3TLU6_ELAGV2.00E-167Secretory carrier membrane protein {ECO:0000313|EMBL:ACF06527.1}
TAIRAT1G612505.00E-157secretory carrier 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017616979951736026+
Transcript Sequence

Network for GWHGAAEX005947

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04144.12SCAMP972688.10E-51
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0015031Biological Processprotein transport
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms49.080
SRR2545915Juvenile tuber55.420
SRP108465SRR5643513five period of Gastrodia elata47.670
SRR5643514five period of Gastrodia elata53.360
SRR5643515five period of Gastrodia elata51.860
SRR5643524five period of Gastrodia elata55.160
SRR5643525five period of Gastrodia elata43.410
SRR5643528five period of Gastrodia elata39.470
SRR5643658five period of Gastrodia elata50.850
SRR5643659five period of Gastrodia elata43.490
SRR5643660five period of Gastrodia elata46.830
SRR5643661five period of Gastrodia elata47.620
SRR5643662five period of Gastrodia elata49.970
SRR5643663five period of Gastrodia elata48.070
SRR5643664five period of Gastrodia elata41.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_147.730
SRR6049655Rhizomagastrodiae_C368-T10_good_164.010
SRR6049656Rhizomagastrodiae_C368-T07_good_157.680
SRR6049657Rhizomagastrodiae_C368-T07_good_146.610
SRR6049658Rhizomagastrodiae_C368-T04_good_165.630
SRR6049659Rhizomagastrodiae_C368-T04_good_166.770
SRR6049660Rhizomagastrodiae_C368-T01_good_161.500
SRR6049661Rhizomagastrodiae_C368-T04_good_161.700
SRR6049662Rhizomagastrodiae_C368-T01_good_155.870
SRR6049663Rhizomagastrodiae_C368-T01_good_161.710
SRR6049664Rhizomagastrodiae_C368-T10_good_158.020
SRR6049665Rhizomagastrodiae_C368-T10_good_158.020
SRP279888GastroGastrodia elata tuber 61.53
JuvenJuvenile tuber58.18
Mother_GastroMother tuber of Gastrodia elata 62.18
Mother_JuvenMother tuber of Juvenile 59.78