Gene detail

Detail information of GWHGAAEX005950/evm.TU.scaffold_175.2

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1886	0	BAH domain proteins
nr	gi\|743766546\|ref\|XP_010913514.1\|	0	PREDICTED: uncharacterized protein LOC105039171 isoform X1 [Elaeis guineensis]
Swissprot	tr\|F4KFC7\|MD26C_ARATH	8.00E-07	Probable mediator of RNA polymerase II transcription subunit 26c
trEMBL	tr\|F6GSU6\|F6GSU6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43003.1}
TAIR	AT3G48050	0	BAH domain ;TFIIS helical bundle-like domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000175	43711	53364	+

Transcript Sequence
>GWHTAAEX005950 ATGCATGGGCGGGAAGGTGAAAAGAGTAAACGGAGGCAGCACATGTGGTCGGTCCCTGCCCCCGGTACAGCATCAACAGTAGTGAAACCGACTGTGATTCAACAGCCACCAGCTTCGCCAGCTAATTTGGTTCAAACCTCGGCTGATTCATTCTTGAAGGACGGGAGGAAGATTCAAGTAGGTGACTGTGCACTTTTTCAGGCTGGCAATGCCCCACCGTTTATTGGAATTATACGATGGTTTACGACTGATAAAGAGGCCTATCTCAAATTGTGTGTAAATTGGCTTTACCGTCCTGCTGACGTAAAGCTTACAAAAGGCATAGTACCAGAAGCCGCACCGAACGAAGTTTTTTACTCATTCCACAAGGACGTAATATCTGCTGCTTCATTGCTTCATCCTTGTAAAGTTGCATTTCTTTGCAAGGGTGCTGAGCTGCCATTGGGAATATCTTCTTTTGTGTGTAGGCGGGTATATGACATAGCAAATAAGTGTTTATGGTGGCTAACTGATCAAGATTATATAAATGAAGAAGTAGATCAGCTATTGGATAAGACACGGCTAGAGATGCATGCTGCAGTGCAATCTGGGGGACGTTCTCCAAAGCGATTAAATGGTTCAGCACCTACAGAGCAGTTAAAATCTGGTTCAGATGGCGTGCAGAATAGCGGAACTTCCTATTCTTCTCAGCTCAAAGGTAAGAAGAGGGACAGAGGTGATCATGCCATAGACCCTAGTAAGCGAGAACGTACTTCAAAAGCTGGTGATGGTGATGCTTCCGTCTGTCACTTTGACAACAATATGCTAAAGTCTGAGATTTCCAAAATAACAGAGAAAGGGGCACTTATAAGTACTGATGGGGTTGAGAAGCTTGTTCAGCTAATGCAAGTTGATAATAGCAAAAAAATCGATTTAACTTGTAGGGTACTGTTAGCAGATGTGATTGCAGCTACGGAAAGAGTTGATTGCTTGAACAAGTTTGTGCAGATCAGGGGTGTGCCTGTCTTGGATGAATGGCTTCAGGAGGCACACAAAGGGAAGGCTGGTGATAGGAACAGTCCTAAAGAGAGCGATAAAGCTGTGGAAGAGCTTTTGTTGGCCCTGCTTCGTGCACTAGATAAGCTACCTGTCAATCTTAATGCTCTCCAGACTTGTAATATTGGCAAGTCTGTGAATCATTTGCGTAGTCATAAGAACTTGGAGATTCAGAAGAAGGCTAGAAGCCTTGTTGACACATGGAAAAAAAGAGTTGATGCTGAAATGAAAACTAATGATACAAAAACCGTTGGTTCTAGCCAAGCCATGACCTGGCCTGTCAAACAGGGGTTCTCTGAATTGTCTCATGCTGGAAAGCGCACCGGATCTGGTGAGCTATCATTGAAAAGCTCAATCACACAGCAATCCACATCGAAGGGCTTTGCTGGTAAGTCTGTCCATGCAGATGCAGTGAAATCATCAGCTGGTATTGTGGGGCCTGTGAAGCAACAAGTTTCTTTGACCCCGGTAGTAATTAATCCGAAGGAGTCTTTTTCAAAAGTTGCTGTTAGCAGTGGGATTTCTGATTCGCCACAGATTATTGCTAAGGAGGAGAAGAGCAGCAGTTCGAGCCAGTCTTGGTCAAGCGATCATGGAAAAGCTGCTGGTTCTTCCTTGAAAGAAGATGCGAGGAGCTCTACTGCAGGATCAGTGAGTGCCAATAAGACATCTGGCTGTTCATCACGGCAACGAAGGTCGAGCAATGGGTTTATAGCCAGCAATATGTCTGGAGGACACAAGGATTGTAATTCAAGCAAATCCGTTATGCTCATTCAGAATTCAGCGAGTGAGAAAGTATCACATGCTGGAGTAAATTACGAAAAAGCAGTTGATGCCTCTGCTTCAGACCATGGAAGTAATCATAGATTGATTGTTAGGCTTCCAAATCCTGGTCGCAGTCCTGCAAGAAGTACTAGTGGCGGCTCCTTGGAGGATCCTTCAGCTGGTAGCAGAGCATCATCTCCTGGTGCCCCGGATAAGCCTGAGCTTGGAGATAGGAAATTGATTGGAAGGGATGATGCTGGTCGAGCTTATACTTCTGCAGATTTCAACGGAGAGTCATGGCAAAGCAATGATGTTAAAGAGGGGCTAATTGCGTGTGATGTAGGTGATAAATCACCCCTTGTACCTAGTGAAGAAGTGAGGGCAGATGATGCTCTAAGGGCTACAGAAATCTCTAAAGCTACCTGCTCATCCTCCGGTAATGATAAGGGTGCCATTGTTAGTGAACCCAATTTGCGGAATTCATTTAGCTCCATGAATGCATTGATTGAAAGCTGTGCTAAATATTCTGAAGCTACCCCACCATTGTCTGGTGGAGATGACATTGGCATGAATTTGCTTGCTAGTGTGGCTGGGGAAATCTCCAAATCTGATATTATATCTCCCTCTTCATCTTCTGGAGGTTCTCCTGGAACGGAGGACCCTTGCAATGGCATAAATGAAGCGAAACCTAAGTTTTCTGCTGTTGATTCTGGGTGTAGGAATATTAGCTCAACCGATGAAAATGCAGATTTAAACAATGGGAAGCATGGGAAAGATAATGTTCCTGTGTTTCCAAAGGATGAGATACAAAAACTGGATGTAAATTTCAATGCCTTGTTAGAAGAAAGACCTCAACAGAATACTCTTCTCGCTGATGTGAAAGAAAAGATTGATAGAGAAGATGAAGATCAGAACCAGATTGAATGGAAGACTGGTGGGCAGGTTAAAGATGGTCTTGCAGATTGCAAACCTGAGGTAAGGAGCCCAACAAATCAAATCAAATTGAGCTGTTCTGTCCATGAAATGAATGCTGAAGCAAGCAAGTTCATCACTGATTCTAGTCGCAAATCTTTGTCTCTTGGTGCTGACTCTGAAGGTTCTGCATCTTGTAAAAATATTGATAAGTTGGTTACGGGGGATTCAGTAGCACGCCATTCTTTTGAGGAGGGTGCTCAAGTTTGTGCAACTTTAACAGGGCAAAAGGCACATTCTGCTGATGAAACTGAAACAATGATGGAAAGAAAGAGTGCTGATGGAACAATTCCCTCTGTTATTGGTAAAGTTTCGGGCTCAGAAACTTCAAAAAATTCATCAACCATGCTGCCTTCAGGCAACATCTCTGCTTCCAGTACCCATGGCATGGTCAACAGTTCAGACATCATAGGTACCACAGCTCTTGAAAAACATTCTGTGAATTCAGGTGATCATGACCGACCGCCCGCTGCTCGTAAGGAAGCCGAAGCTTGTGTCAAACTGTCTGCTGTCGATGGAGAAAGTAAAGAGAAAGTCACGGCTGAAACGTCTTCATTTGTTATTGCCGCTGGACAAGATGCGAAGCTTGACTTTGACTTGAATGAAGGCATTGTTGGAGATGATGCAAATCTGAGTGAGCCTATTTCCACTGCTGCTTCTGTTTATTCACCTGCATTGAGAATTTCGAGTTTCTCATCTCTTGTATCTCCGCCTCTTCTCAATGGATTGCCAGCTCCAATAACTGTTGCTGCTCCTGCCAAAGGACCTTTTATGCCTCCTGAAAATTTATTGAAGAGCAAGAGTGAACTGGGATGGAAAGGCTCAGCTGCCACGAGTGCATTTCGTCCTGCAGAGCCTAGAAAGAATTTGGAGATGCCGCTCAATGCTTCTGATGTGCAATCGTCAGACTCTACAATGACTAAACAAGGCCGCCCTCCTTTGGAAATTGATCTCAATATTGCTGATGACAGATCCTTGGATGATGTTTCTCAGAGCTCTGCCCAGACAACAGGCTCTGAGTCCGGTGTGATCAGTAATCATGTTGTTGTTCCTTCAAGAGCTTCTGGAGGACTTGATCTTGACCTGAACAGAGCTGATGAAAGTGCAGAAAATGGCCATTTCTTGGCCAGTGTCAGCCATCCATTGGAAGTACCGCTGTTGCCTTCCAAGCCAATGACAAATGGATTCCCTCATGCAGAGACCAATATGTTGAGGGATTTTGATCTAAACAATGGACCTGGTGTCGATGAGGTCGGTTCGGAACTACTACCAAGAAGCCAGAATCTGAAGAATAGCAATAATGTTCCATTTGTTTCTCCGATCGTGGGTTTCAGAGTGAACAATTCCGAACTGGGAAGTGGATGGTTTCCTCACGGTAACTCATACCCAGCGGTTACTATTCCATCATTCTTGCCTGACAGGGGAGAGCAACCGTACCCTTTGGTTGCACCTGTTGGAACTCAGAGGATTTTGGGGACTGTAAACAGTATTGGCTCTTTTGGGAGTGATATTTATCGAGGTCCGGTCCTTTCATCCTCTCCAGCCATGACGTTTTCACCAGCTGCCACAGCATTTTCTTATGCTGGTTTTCCCTTCGGTTCTAGTTTTCCTTTGGCATCTACATCTTTTTCTGCCGGATCAACAAACTATGTTGATTCTTCATCAGGCGGCTCGTTCTTCCCACCAATCCCTTCTCTTGTCGGAGCTTCAGGTGCTGTTTCTTCTTCTTATGCTGCAAGGCCTTACATGATTAGCCTACCAGAAGGTGGCCCTGCTGGTACATCTGACAGCAATCGAAAATGGGGGAGACAAGGCCTGGATCTAAATGCAGGCCCAGGAAGTGCAGAGGAAACTAAAGACGACAGAGTGTCTTCTACAAGACAGCTTCATGCGGACGACCAGACAAGGCTATATCAGACTTCAGGCAGTGTGTTAAAACGAAAGGAACCGGAATCCAGCTGGGAGCCAGAAAGATTCACTTTTAAGCAGCCTTCATGGCAGTGA

Network for GWHGAAEX005950

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01426.17	BAH	57	163	4.30E-06
PF08711.10	Med26	368	417	3.80E-12

Protein Sequence

>GWHPAAEX005950
MHGREGEKSKRRQHMWSVPAPGTASTVVKPTVIQQPPASPANLVQTSADSFLKDGRKIQVGDCALFQAGNAPPFIGIIRWFTTDKEAYLKLCVNWLYRPADVKLTKGIVPEAAPNEVFYSFHKDVISAASLLHPCKVAFLCKGAELPLGISSFVCRRVYDIANKCLWWLTDQDYINEEVDQLLDKTRLEMHAAVQSGGRSPKRLNGSAPTEQLKSGSDGVQNSGTSYSSQLKGKKRDRGDHAIDPSKRERTSKAGDGDASVCHFDNNMLKSEISKITEKGALISTDGVEKLVQLMQVDNSKKIDLTCRVLLADVIAATERVDCLNKFVQIRGVPVLDEWLQEAHKGKAGDRNSPKESDKAVEELLLALLRALDKLPVNLNALQTCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVDAEMKTNDTKTVGSSQAMTWPVKQGFSELSHAGKRTGSGELSLKSSITQQSTSKGFAGKSVHADAVKSSAGIVGPVKQQVSLTPVVINPKESFSKVAVSSGISDSPQIIAKEEKSSSSSQSWSSDHGKAAGSSLKEDARSSTAGSVSANKTSGCSSRQRRSSNGFIASNMSGGHKDCNSSKSVMLIQNSASEKVSHAGVNYEKAVDASASDHGSNHRLIVRLPNPGRSPARSTSGGSLEDPSAGSRASSPGAPDKPELGDRKLIGRDDAGRAYTSADFNGESWQSNDVKEGLIACDVGDKSPLVPSEEVRADDALRATEISKATCSSSGNDKGAIVSEPNLRNSFSSMNALIESCAKYSEATPPLSGGDDIGMNLLASVAGEISKSDIISPSSSSGGSPGTEDPCNGINEAKPKFSAVDSGCRNISSTDENADLNNGKHGKDNVPVFPKDEIQKLDVNFNALLEERPQQNTLLADVKEKIDREDEDQNQIEWKTGGQVKDGLADCKPEVRSPTNQIKLSCSVHEMNAEASKFITDSSRKSLSLGADSEGSASCKNIDKLVTGDSVARHSFEEGAQVCATLTGQKAHSADETETMMERKSADGTIPSVIGKVSGSETSKNSSTMLPSGNISASSTHGMVNSSDIIGTTALEKHSVNSGDHDRPPAARKEAEACVKLSAVDGESKEKVTAETSSFVIAAGQDAKLDFDLNEGIVGDDANLSEPISTAASVYSPALRISSFSSLVSPPLLNGLPAPITVAAPAKGPFMPPENLLKSKSELGWKGSAATSAFRPAEPRKNLEMPLNASDVQSSDSTMTKQGRPPLEIDLNIADDRSLDDVSQSSAQTTGSESGVISNHVVVPSRASGGLDLDLNRADESAENGHFLASVSHPLEVPLLPSKPMTNGFPHAETNMLRDFDLNNGPGVDEVGSELLPRSQNLKNSNNVPFVSPIVGFRVNNSELGSGWFPHGNSYPAVTIPSFLPDRGEQPYPLVAPVGTQRILGTVNSIGSFGSDIYRGPVLSSSPAMTFSPAATAFSYAGFPFGSSFPLASTSFSAGSTNYVDSSSGGSFFPPIPSLVGASGAVSSSYAARPYMISLPEGGPAGTSDSNRKWGRQGLDLNAGPGSAEETKDDRVSSTRQLHADDQTRLYQTSGSVLKRKEPESSWEPERFTFKQPSWQ

Gene family

Gene family	subfamily
Transcription Factors Family	IWS1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003682	Molecular Function	chromatin binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	76.670
SRP064423	SRR2545915	Juvenile tuber	71.700
SRP108465	SRR5643513	five period of Gastrodia elata	41.190
	SRR5643514	five period of Gastrodia elata	42.120
	SRR5643515	five period of Gastrodia elata	43.690
	SRR5643524	five period of Gastrodia elata	39.680
	SRR5643525	five period of Gastrodia elata	58.930
	SRR5643528	five period of Gastrodia elata	52.030
	SRR5643658	five period of Gastrodia elata	56.520
	SRR5643659	five period of Gastrodia elata	52.100
	SRR5643660	five period of Gastrodia elata	61.360
	SRR5643661	five period of Gastrodia elata	50.240
	SRR5643662	five period of Gastrodia elata	57.860
	SRR5643663	five period of Gastrodia elata	55.450
	SRR5643664	five period of Gastrodia elata	68.970
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	43.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	50.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	54.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	63.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	53.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.680
SRP279888	Gastro	Gastrodia elata tuber	58.93
	Juven	Juvenile tuber	80.36
	Mother_Gastro	Mother tuber of Gastrodia elata	52.55
	Mother_Juven	Mother tuber of Juvenile	100.90