Detail information of GWHGAAEX005953/evm.TU.scaffold_175.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34344.00E-5560S ribosomal protein L22
nrgi|695008814|ref|XP_009391008.1|2.62E-63PREDICTED: 60S ribosomal protein L22-2-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9M9W1|RL222_ARATH1.00E-5560S ribosomal protein L22-2
trEMBLtr|M0SAP0|M0SAP0_MUSAM1.00E-63Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P00720_001}
TAIRAT3G055604.00E-55Ribosomal L22e protein family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000175170004176360+
Transcript Sequence

Network for GWHGAAEX005953

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01776.16Ribosomal_L22e161273.60E-44
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02891RP-L22e, RPL22 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms248.530
SRR2545915Juvenile tuber298.360
SRP108465SRR5643513five period of Gastrodia elata1082.480
SRR5643514five period of Gastrodia elata1364.880
SRR5643515five period of Gastrodia elata1150.270
SRR5643524five period of Gastrodia elata1172.960
SRR5643525five period of Gastrodia elata872.840
SRR5643528five period of Gastrodia elata756.350
SRR5643658five period of Gastrodia elata471.090
SRR5643659five period of Gastrodia elata1128.910
SRR5643660five period of Gastrodia elata1300.770
SRR5643661five period of Gastrodia elata1331.440
SRR5643662five period of Gastrodia elata986.160
SRR5643663five period of Gastrodia elata945.170
SRR5643664five period of Gastrodia elata1028.960
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1996.290
SRR6049655Rhizomagastrodiae_C368-T10_good_1601.420
SRR6049656Rhizomagastrodiae_C368-T07_good_11342.010
SRR6049657Rhizomagastrodiae_C368-T07_good_1877.120
SRR6049658Rhizomagastrodiae_C368-T04_good_1920.290
SRR6049659Rhizomagastrodiae_C368-T04_good_1718.140
SRR6049660Rhizomagastrodiae_C368-T01_good_1997.530
SRR6049661Rhizomagastrodiae_C368-T04_good_11011.040
SRR6049662Rhizomagastrodiae_C368-T01_good_11899.940
SRR6049663Rhizomagastrodiae_C368-T01_good_11506.100
SRR6049664Rhizomagastrodiae_C368-T10_good_11997.760
SRR6049665Rhizomagastrodiae_C368-T10_good_11997.760
SRP279888GastroGastrodia elata tuber 1,655.28
JuvenJuvenile tuber1,864.76
Mother_GastroMother tuber of Gastrodia elata 1,077.74
Mother_JuvenMother tuber of Juvenile 998.52