Detail information of GWHGAAEX005959/evm.TU.scaffold_175.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672113118|ref|XP_008809278.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970 [Phoenix dactylifera] |
| Swissprot | tr|Q9LU94|PP255_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At3g25970 |
| trEMBL | tr|I1QI69|I1QI69_ORYGL | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA08G0112000.1} |
| trEMBL | tr|I1QI69|I1QI69_ORYGL | 2.00E-50 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA08G0112000.1} |
| TAIR | AT3G25970 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000175 | 269735 | 278560 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005959
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 48 | 75 | 0.23 |
| PF13041.5 | PPR_2 | 76 | 121 | 7.40E-08 |
| PF13041.5 | PPR_2 | 176 | 217 | 3.70E-12 |
| PF01535.19 | PPR | 250 | 274 | 0.04 |
| PF13041.5 | PPR_2 | 279 | 325 | 9.40E-11 |
| PF13041.5 | PPR_2 | 383 | 429 | 6.30E-09 |
| PF13041.5 | PPR_2 | 484 | 531 | 1.50E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.550 |
| SRR2545915 | Juvenile tuber | 1.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.430 |
| SRR5643514 | five period of Gastrodia elata | 1.910 | |
| SRR5643515 | five period of Gastrodia elata | 2.370 | |
| SRR5643524 | five period of Gastrodia elata | 2.230 | |
| SRR5643525 | five period of Gastrodia elata | 1.300 | |
| SRR5643528 | five period of Gastrodia elata | 1.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.910 | |
| SRR5643659 | five period of Gastrodia elata | 2.520 | |
| SRR5643660 | five period of Gastrodia elata | 3.500 | |
| SRR5643661 | five period of Gastrodia elata | 2.920 | |
| SRR5643662 | five period of Gastrodia elata | 3.440 | |
| SRR5643663 | five period of Gastrodia elata | 2.720 | |
| SRR5643664 | five period of Gastrodia elata | 3.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.410 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.70 |
| Juven | Juvenile tuber | 2.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.50 | |
| Mother_Juven | Mother tuber of Juvenile | 1.59 |