Gene detail

Detail information of GWHGAAEX005965/evm.TU.scaffold_175.19

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0246	Kinesin-like protein
nr	gi\|672161992\|ref\|XP_008800824.1\|	PREDICTED: kinesin-13A [Phoenix dactylifera]
Swissprot	tr\|Q940B8\|KIN13_ARATH	Kinesin-13A
trEMBL	tr\|A0A067K7L7\|A0A067K7L7_JATCU	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}
TAIR	AT3G16630	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000175	508762	566365	+

Transcript Sequence
>GWHTAAEX005965 GAATGCGTATATTTGTGGATTAGGGAACAGACACCACTATATATAACATACCGATCGGCAGGGGCGTGCAGCTTCAAGCGAGGAAGATGGATTCCATCAAGAAGAAGCAATCCCGAGATCTGTCCTGTTAAGTTAGGGTTCTTTCTCCGATCCCATTTGTGTTTTTCTTGATCGTCTTGCCCAAATTCTCGTGTCCGTGCTTCCATTCTTCCATTTAGGCCCCTTCTCCCCGAGCCCAAGACGGGCGGCATTTTCATATTCTCCTCGGGAGAGTAGTTCACCTTGAAGGATCGCCGGGGAACTCGGCATTGGATTCGTTTACTGAGGAGGAATTTGGCGTCTCTACAGAGTTCACAGTGGCAGATGGGTGGGGGCCAGATGCAGCAGGGCAAAGCCTCGGCAGCAACTGCGCTGTATGATCACCATCATGGTGCGGTTCCCGGCGGGGACGCAGGCGACGCAATAATGGCACGGTGGCTGCAGTCGGCCGGACTGCAGCACCTCGCTTCGCCGCCTGCATCAGCCGACCAACGATTTTTGCCGAATCTTCTAATGCAGGGTTACGGACCTCAGAGTGCCGAGGAGAAGCAGAGGCTTTTGAAACTCTTACGAAATTTGAATTTCAGCGGTGAATCTGGCTCAGAGCTTTATCCAATGAATGCGCATGGTTTTGGGTCGACTGTTTCTACAGATGGTTTTTATTCACCTGAGCTGAGAGGTGAATTTGGAGCTGGTCTTTTGGATCTTCATGCCATGGATGATATGGAACTGCTTTCTGAGCATGCAATATCAGAAGAGACATTTGAGGCATCACCATTAATACCTGCTCAGGGAGATGACCTCGATTCAATATCAATCAAGCAACAAGGTCCATCTGAAGGCAATTTTAAGGCATCCCTAACTGATAAAGAAACTAGTGCAAGGGAAAACAATGTAGCCAAGATCAAAGTTGTGGTTCGTAAAAGGCCACTTAACAGGAAGGAAATTTCTCGAAAAGAAGAAGATATTGTAACTGTAAATGAAAATGCATATTTAGCTGTGCATGAGCCTAAGTTAAAGGTGGACTTGACTGCATATGTGGAAAAGCATGAGTTTTGTTTTGACGCTGTTCTTGATGAACATGTTACAAATGATGAGGTGTATCGAGTGACTGTTGAACCAATAATACCAACAATATTTAAGCATACAAAAGCGACATGCTTTGCATATGGTCAAACAGGAAGCGGCAAGACATATACAATGAAGCCATTGCCCCTTCGTGCTGTTGAAGATATTGTTCGACTGCTGCGCCACCCAAGCTATGTGAACCAGAGGTTTAAACTCTGGCTTAGCTATTTTGAGATCTACGGAGGGAAGCTTTTTGATCTTCTCAGCGATAGGAGGAAACTCTGCATGAGGGAAGATGGCAGGCAGCAAGTCTGCATTGTTGGGCTGCAAGAGTTTGAGGTTTCGAACGTGCATATAGTCAATGAATATATTGAGAAGGGGAATTCTGCGCGAAGCACAGGCTCGACTGGAGCCAATGAAGAGTCCTCAAGATCTCACGCTATCTTACAGCTTGCTATTAAGAAGCACAGGGATGTTGTCGAATCACGAAAGCAATCTGATCCCAATGAAGCTAACAAGGGTGGGAAGGTCATCGGGAAGATCTCTTTTATCGATCTTGCTGGAAGCGAGCGTGGAGCCGATACCACTGATAATGATCGCCAGACACGGATTGAAGGAGCAGAAATAAACAAGAGTCTCTTGGCTTTGAAAGAATGCATTCGCGCACTTGATAATGATCAAATCCACATTCCCTTCAGAGGAAGCAAACTCACAGAAGTGCTTCGCGACTCCTTTGTTGGGAATTCAAAGACAGTTATGATTTCCTGTATTTCGCCTAATGCTGGTTCTTGCGAGCACACCCTTAATACTCTCAGATATGCAGACAGAGTTAAAAGCCTCTCAAAGAGTGGAAACTCAAAAAAGGACCAAGCTTCGATTCCTTCACTACCGCCCGTCAAGGAATCTTTGACAGCCCCCTTGTTTTTGTTCACAGATGAAACAGAGCATTCTGAAACTCCTAGAAGGAATGCCGAAACCTTTGCATATAATTCTACTACAGTTCCTGATCGGAACTCATCTGGTTCCGCCCCAAGCCAGGCATATAATGGGAGAGAGGACTGGGCACCTGGTTTGTCTTCCGAAAGGGAAAAGATTGAGGTTAAGACATTCTATGGTGCTTCCTCTAGTCATCATCATCATCGGTTATCTTTTGATGGTCAGGATGAAGATGAAAAGGCATCAAAAGTTTCGCCACCACGCAGGAAAGCCACTAGAGAAGAAAAGCTTGAAAAAAAGATGGGGTTGTCCAGGAAAAATACTTCTGATGGGCCAACCACAAGCAGTATCAGCAAGCAGCAAAACGAGCAGGAAGCTTCATTGGTTGACGGAGATAATAATGCATTGCTTGAGGAGAAAGAAGCTTTAATTTGTGCTCATAGAAAAGAAATCGAGAACACAATGGAGATTGTTCGAGAGGAGATGAATTTATTGTCAGAGGTTGACCGGCCGGGAAGCCAAATCGACAGCTATGTTTCGCAACTTAGCTTCCTCCTGTCACGTAAGGCTGCTGGCCTCGTCAGCCTGCAGGCTCGCCTGGCTAGATTTCAGCACCGCGTAAAAGAGCACGAGATACTCAATCGCAAGAAGGGTTCCAGATAATTTGATTCCCCCTTCTCCACTGTATCTTCTTTTTCTTCTTATTTCATAAGAGGTATCCCTCATTCAATCCTATGTATTGCTTCTACTGATTGTAATTGCCAAAGATTTTTCATTCTTAAAATGCACCATTGCTGGCAATATTGTATGATTCTACCTGTATCTTTCTTTATTTGCTTGGCTTGGCCGTTTTTCCCTTTTTGGAGGGATTTCAAAACTTAAAATAAGCAACTCTCGCTGCCATTA

Network for GWHGAAEX005965

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00225.22	Kinesin	199	527	1.00E-92

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10393	KIF2_24, MCAK	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0007018	Biological Process	microtubule-based movement
GO:0005524	Molecular Function	ATP binding
GO:0003777	Molecular Function	microtubule motor activity
GO:0008017	Molecular Function	microtubule binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.040
SRP064423	SRR2545915	Juvenile tuber	10.510
SRP108465	SRR5643513	five period of Gastrodia elata	16.080
	SRR5643514	five period of Gastrodia elata	21.410
	SRR5643515	five period of Gastrodia elata	17.860
	SRR5643524	five period of Gastrodia elata	18.850
	SRR5643525	five period of Gastrodia elata	11.700
	SRR5643528	five period of Gastrodia elata	11.200
	SRR5643658	five period of Gastrodia elata	14.000
	SRR5643659	five period of Gastrodia elata	10.820
	SRR5643660	five period of Gastrodia elata	9.910
	SRR5643661	five period of Gastrodia elata	8.920
	SRR5643662	five period of Gastrodia elata	9.190
	SRR5643663	five period of Gastrodia elata	10.270
	SRR5643664	five period of Gastrodia elata	8.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.560
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	26.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.930
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.800
SRP279888	Gastro	Gastrodia elata tuber	7.35
	Juven	Juvenile tuber	9.76
	Mother_Gastro	Mother tuber of Gastrodia elata	24.56
	Mother_Juven	Mother tuber of Juvenile	19.96