Detail information of GWHGAAEX005967/evm.TU.scaffold_175.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672162000|ref|XP_008800829.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Phoenix dactylifera] |
| Swissprot | tr|Q9M907|PP217_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g06920 |
| trEMBL | tr|V7BC04|V7BC04_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW14398.1} (Fragment) |
| trEMBL | tr|V7BC04|V7BC04_PHAVU | 1.00E-67 | Uncharacterized protein {ECO:0000313|EMBL:ESW14398.1} (Fragment) |
| TAIR | AT3G06920 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000175 | 613304 | 616129 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005967
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13812.5 | PPR_3 | 189 | 248 | 0.00013 |
| PF01535.19 | PPR | 276 | 302 | 0.00035 |
| PF13041.5 | PPR_2 | 307 | 355 | 3.40E-16 |
| PF13041.5 | PPR_2 | 376 | 423 | 5.20E-11 |
| PF13041.5 | PPR_2 | 445 | 494 | 2.80E-12 |
| PF13041.5 | PPR_2 | 515 | 561 | 1.80E-11 |
| PF12854.6 | PPR_1 | 617 | 649 | 5.00E-06 |
| PF13041.5 | PPR_2 | 656 | 704 | 1.20E-17 |
| PF12854.6 | PPR_1 | 721 | 753 | 3.30E-09 |
| PF13041.5 | PPR_2 | 760 | 809 | 1.10E-18 |
| PF12854.6 | PPR_1 | 826 | 857 | 3.20E-08 |
| PF13041.5 | PPR_2 | 865 | 914 | 4.80E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.340 |
| SRR2545915 | Juvenile tuber | 15.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.500 |
| SRR5643514 | five period of Gastrodia elata | 16.920 | |
| SRR5643515 | five period of Gastrodia elata | 15.550 | |
| SRR5643524 | five period of Gastrodia elata | 14.970 | |
| SRR5643525 | five period of Gastrodia elata | 16.740 | |
| SRR5643528 | five period of Gastrodia elata | 10.980 | |
| SRR5643658 | five period of Gastrodia elata | 13.440 | |
| SRR5643659 | five period of Gastrodia elata | 22.990 | |
| SRR5643660 | five period of Gastrodia elata | 25.940 | |
| SRR5643661 | five period of Gastrodia elata | 26.450 | |
| SRR5643662 | five period of Gastrodia elata | 21.340 | |
| SRR5643663 | five period of Gastrodia elata | 22.840 | |
| SRR5643664 | five period of Gastrodia elata | 22.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.350 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.15 |
| Juven | Juvenile tuber | 14.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.68 | |
| Mother_Juven | Mother tuber of Juvenile | 13.01 |