Detail information of GWHGAAEX005971/evm.TU.scaffold_175.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|404216006|ref|YP_006670201.1| | 3.00E-19 | Cytochrome P450 [Gordonia sp. KTR9] |
| KOG | KOG0156 | 6.00E-65 | Cytochrome P450 CYP2 subfamily |
| nr | gi|225454613|ref|XP_002265797.1| | 1.32E-76 | PREDICTED: cytochrome P450 89A2-like [Vitis vinifera] |
| Swissprot | tr|Q9SRQ1|C89A9_ARATH | 1.00E-58 | Cytochrome P450 89A9 |
| trEMBL | tr|F6HE92|F6HE92_VITVI | 5.00E-77 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB50538.1} |
| TAIR | AT1G64940 | 6.00E-65 | cytochrome P450, family 87, subfamily A, polypeptide 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000175 | 687337 | 690295 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005971
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00067.21 | p450 | 32 | 476 | 8.20E-66 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP89A6 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0005506 | Molecular Function | iron ion binding |
| GO:0016705 | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| GO:0020037 | Molecular Function | heme binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 348.360 |
| SRR2545915 | Juvenile tuber | 68.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 213.240 |
| SRR5643514 | five period of Gastrodia elata | 191.820 | |
| SRR5643515 | five period of Gastrodia elata | 93.370 | |
| SRR5643524 | five period of Gastrodia elata | 146.900 | |
| SRR5643525 | five period of Gastrodia elata | 0.260 | |
| SRR5643528 | five period of Gastrodia elata | 0.200 | |
| SRR5643658 | five period of Gastrodia elata | 0.150 | |
| SRR5643659 | five period of Gastrodia elata | 0.700 | |
| SRR5643660 | five period of Gastrodia elata | 0.620 | |
| SRR5643661 | five period of Gastrodia elata | 0.560 | |
| SRR5643662 | five period of Gastrodia elata | 0.860 | |
| SRR5643663 | five period of Gastrodia elata | 0.030 | |
| SRR5643664 | five period of Gastrodia elata | 0.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 804.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1206.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 983.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1414.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 925.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1014.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1013.010 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1382.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 525.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 203.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 460.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 460.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.80 |
| Juven | Juvenile tuber | 825.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.71 | |
| Mother_Juven | Mother tuber of Juvenile | 241.72 |