Detail information of GWHGAAEX005972/evm.TU.scaffold_175.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|563711532|ref|YP_008872310.1| | 7.00E-34 | hypothetical protein RAAC3_TM7C00001G0122 [Candidatus Saccharibacteria bacterium RAAC3_TM7_1] |
| KOG | KOG0188 | 2.00E-09 | Alanyl-tRNA synthetase |
| nr | gi|672171365|ref|XP_008805752.1| | 7.16E-117 | PREDICTED: probable alanine--tRNA ligase, chloroplastic [Phoenix dactylifera] |
| Swissprot | tr|P36428|SYA_ARATH | 8.00E-07 | Alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_03133} (Precursor) |
| trEMBL | tr|M0RJT2|M0RJT2_MUSAM | 4.00E-110 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P20070_001} |
| TAIR | 7297398 | 2.00E-09 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000175 | 761649 | 819668 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005972
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01411.18 | tRNA-synt_2c | 35 | 106 | 1.60E-10 |
| PF07973.13 | tRNA_SAD | 208 | 237 | 1.80E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0043039 | Biological Process | tRNA aminoacylation |
| GO:0006419 | Biological Process | alanyl-tRNA aminoacylation |
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0004813 | Molecular Function | alanine-tRNA ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 45.460 |
| SRR2545915 | Juvenile tuber | 44.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.770 |
| SRR5643514 | five period of Gastrodia elata | 14.630 | |
| SRR5643515 | five period of Gastrodia elata | 14.330 | |
| SRR5643524 | five period of Gastrodia elata | 11.970 | |
| SRR5643525 | five period of Gastrodia elata | 9.900 | |
| SRR5643528 | five period of Gastrodia elata | 7.800 | |
| SRR5643658 | five period of Gastrodia elata | 8.560 | |
| SRR5643659 | five period of Gastrodia elata | 16.560 | |
| SRR5643660 | five period of Gastrodia elata | 18.510 | |
| SRR5643661 | five period of Gastrodia elata | 17.560 | |
| SRR5643662 | five period of Gastrodia elata | 14.530 | |
| SRR5643663 | five period of Gastrodia elata | 10.110 | |
| SRR5643664 | five period of Gastrodia elata | 18.420 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.510 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.010 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.36 |
| Juven | Juvenile tuber | 13.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.08 | |
| Mother_Juven | Mother tuber of Juvenile | 11.62 |