Gene detail

Detail information of GWHGAAEX005973/evm.TU.scaffold_175.30

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|499080592\|ref\|YP_007978201.1\|	2.00E-07	Maltodextrin glucosidase [Thermotoga maritima MSB8]
KOG	KOG1764	0	5'-AMP-activated protein kinase, gamma subunit
nr	gi\|743844884\|ref\|XP_010938454.1\|	0	PREDICTED: sucrose nonfermenting 4-like protein [Elaeis guineensis]
Swissprot	tr\|Q944A6\|SNF4_ARATH	0	Sucrose nonfermenting 4-like protein
trEMBL	tr\|D7U241\|D7U241_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36807.3}
TAIR	AT1G09020	0	homolog of yeast sucrose nonfermenting 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000175	941372	1005965	+

Transcript Sequence
>GWHTAAEX005973 AAAAAAAAAAAAAAAGAACCCCTTCTATGCTCACCGCGTATTCCTCGACACCACCCTCTTCAGTTTCCTTCGAAGAATTCCCTCAAAGCTCCGATTCGACACCAATGGTTAATACCCTCTCACAAAGCTGATGCTGATACTTGAGTTGAGGCGTCGGGATTGACGGACAGACTTTCCTGGTGAAATTTTTGGATTTTGGCTCTTCACAGTTCAGCGAGAGGCTGAGGCGTTACAACGAAAGAATCTTTATGGTTTGTGATTGTGGAAGTTTCACTAGTGTTGGAGATTCTTATAACCGCCTTGCACGAAATGTTTGATCCGAGCGTTAGTATGTGTCTGCGAGGTTATATTCTCGGAAGGGAACTTTAAATTGGTTGCAGGGTTCCAAATCTTTTTCTTCTGACATAGGGCTGAGCTTCAGTGTGATGGGATATGCTTTGTTGTGCCATCTGTTTCCATGAAGCGTAGCTTTGGAGAGAGGCATTGGGGTGGAAACTGGATTTTTAGATTACTGACTGCGGATTCTACGGAAGAGGAGATTTTGGAAGTGAAGGCAGAAAACTGTAAACCAATTTTTTTTGAAAATTATGTTTTCTTCGGGAGTGGATACTTCACAGGACTCTAGCTTGGCTACAGGGGCTGTGCTATTTCCTACACGGTTTGTATGGCCTCATGGAGGAAGAAGAGTATTTTTAACAGGATCTTTTACAAGGTGGTCTGATCATATACCTATGTCGCTGATGGAGGATTGTCCTACTGTATTTCAGGCTATTTGTAACTTAACGCCAGGCTTGCATCAGTATAAATTCTATGTTGATGGAGAGTGGCGTCATGATGAGAACCAACCTCATGTGTCAGGCAATTATGGCATGGTCAACGTATTGTTCCTAAGTGGGGAACCTGATCTTGTTGCTTCAATTGTGAGCCCTGGGACTCCTGGCAGCAGAAATAACATGGATGTTGATAATGAAACTTTTCGGCGTGCGGTTACAATTTCAAGTGGTTCAATACAAGAAACAGTTCTGAGAATCTCAAAAGCTGACATAGAGCTGTCACGTCATCACATTTCTGTATTCTTGTCGACAAATACTTCTTATGACTTGCTACCAGATTCGGGCAAGGTAATTGCCCTGGATGTTAATTTACCGGTGAAGCAAGCTTTCCATATCCTCTATGAACAAGGAATTCCTGTAGCTCCGTTGTGGGACTTTTACAGGGGACAGTTTGTGGGGATGCTGAGTGCGTTGGATTTTATTTTGATCCTAAGGGAGCTTGGAAACCACGGTTCTAATCTTACAGAGGAAGAGCTTGAGACACACACAATATCAGCCTGGAAATTGGGAAAGAGACAACGTTATGGTCAAGTGGATGCTCATGGAAGGCCAATTGAAAGACATTTAGTTCATGCTGGTCCGTATGATTCGTTAAAGGATGTAGCTGTAAAGATACTTGGGAATGAGGTCGCTACAATCCCTATTATCCATTCGTCATCTCCGGATGGATCATTCCCTCAATTATTACATCTTGCATCTCTATCAGGAATTCTTAGATGTATTTGTAGACATTTTAGACACTCTTCTAGTTCTTTGCCTATACTACAGCAACCAATATGCAACATCCCGTTGGGTTCGTGGGTTCCAAAAATTGGGGAAGCCAGTAGACGTCCATTAGCAATGCTCAGACCAAATGCTTCACTTGGTTCTGCTTTGTCTTTGCTAGTACAAGCTCGTGTAAGTTCTATTCCAATAGTTGATGATAATGACTCTTTACTCGATACATATTGCCGAAGTGACATCACAGCTCTGGCCAAAGATAGAGCTTACGCACAGATTCATCTTGATGAAATGAACATCCATCAGGCGCTTCAGCTTGGTCAAGACGCAAATTCTCCTCATGGCTTTTTTAGTGGGCAGAGATGCCAAATGTGCCTTCGCTCTGATTCCTTGCAGAAAGTCATGGAACGGCTGTCCAGCCCCGGGGTTAGGCGCGTCATTGTTGTGGAGGCTGGAAGCAAGCGTGTGGAAGGCATTATTTCTCTAAGTGATCTATTCAGGTTCTTGCTTGGTTAGCTCAAAAATTTATTTTGGGAGTGAAAACAGCAACGGAGATTATTTATATTTCTTTTTATTATTGTTATTGTTATTATTATTA

Network for GWHGAAEX005973

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16561.4	AMPK1_CBM	22	97	4.30E-26
PF00571.27	CBS	354	403	2.40E-05
PF00571.27	CBS	446	492	6.10E-08

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM48

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	49.220
SRP064423	SRR2545915	Juvenile tuber	43.730
SRP108465	SRR5643513	five period of Gastrodia elata	34.740
	SRR5643514	five period of Gastrodia elata	37.130
	SRR5643515	five period of Gastrodia elata	36.630
	SRR5643524	five period of Gastrodia elata	34.240
	SRR5643525	five period of Gastrodia elata	50.660
	SRR5643528	five period of Gastrodia elata	41.800
	SRR5643658	five period of Gastrodia elata	47.420
	SRR5643659	five period of Gastrodia elata	38.450
	SRR5643660	five period of Gastrodia elata	41.550
	SRR5643661	five period of Gastrodia elata	38.390
	SRR5643662	five period of Gastrodia elata	43.990
	SRR5643663	five period of Gastrodia elata	40.080
	SRR5643664	five period of Gastrodia elata	40.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.430
SRP279888	Gastro	Gastrodia elata tuber	43.67
	Juven	Juvenile tuber	47.41
	Mother_Gastro	Mother tuber of Gastrodia elata	42.34
	Mother_Juven	Mother tuber of Juvenile	46.88