Detail information of GWHGAAEX005974/evm.TU.scaffold_175.32


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG02274.00E-129Splicing factor 3a, subunit 2
nrgi|743855669|ref|XP_010941544.1|7.08E-149PREDICTED: splicing factor 3A subunit 2 [Elaeis guineensis]
trEMBLtr|A0A067KBK2|A0A067KBK2_JATCU3.00E-143Uncharacterized protein {ECO:0000313|EMBL:KDP29194.1}
TAIRAT2G326004.00E-129hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017510249971046212-
Transcript Sequence

Network for GWHGAAEX005974

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12874.6zf-met52767.20E-06
PF16835.4SF3A21102048.50E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12826SF3A2, SAP62 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding
GO:0003676Molecular Functionnucleic acid binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.870
SRR2545915Juvenile tuber33.060
SRP108465SRR5643513five period of Gastrodia elata43.750
SRR5643514five period of Gastrodia elata43.860
SRR5643515five period of Gastrodia elata43.250
SRR5643524five period of Gastrodia elata46.880
SRR5643525five period of Gastrodia elata33.950
SRR5643528five period of Gastrodia elata40.880
SRR5643658five period of Gastrodia elata32.360
SRR5643659five period of Gastrodia elata60.260
SRR5643660five period of Gastrodia elata73.530
SRR5643661five period of Gastrodia elata75.180
SRR5643662five period of Gastrodia elata66.740
SRR5643663five period of Gastrodia elata65.580
SRR5643664five period of Gastrodia elata78.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_162.560
SRR6049655Rhizomagastrodiae_C368-T10_good_198.530
SRR6049656Rhizomagastrodiae_C368-T07_good_154.880
SRR6049657Rhizomagastrodiae_C368-T07_good_157.310
SRR6049658Rhizomagastrodiae_C368-T04_good_170.000
SRR6049659Rhizomagastrodiae_C368-T04_good_173.000
SRR6049660Rhizomagastrodiae_C368-T01_good_167.990
SRR6049661Rhizomagastrodiae_C368-T04_good_166.440
SRR6049662Rhizomagastrodiae_C368-T01_good_167.930
SRR6049663Rhizomagastrodiae_C368-T01_good_171.130
SRR6049664Rhizomagastrodiae_C368-T10_good_160.780
SRR6049665Rhizomagastrodiae_C368-T10_good_160.780
SRP279888GastroGastrodia elata tuber 79.80
JuvenJuvenile tuber77.29
Mother_GastroMother tuber of Gastrodia elata 42.16
Mother_JuvenMother tuber of Juvenile 62.60