Detail information of GWHGAAEX005975/evm.TU.scaffold_175.33


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|305662490|ref|YP_003858778.1|4.00E-24proteasome endopeptidase complex subunit beta [Ignisphaera aggregans DSM 17230]
KOGKOG01742.00E-14120S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3
nrgi|695043758|ref|XP_009409586.1|3.57E-146PREDICTED: proteasome subunit beta type-6-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q8LD27|PSB6_ARATH5.00E-142Proteasome subunit beta type-6 (Precursor)
trEMBLtr|B9SPS6|B9SPS6_RICCO2.00E-143Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}
TAIRAT4G313002.00E-141N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017510660221115842-
Transcript Sequence

Network for GWHGAAEX005975

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00227.25Proteasome622422.20E-46
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02738PSMB6 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0051603Biological Processproteolysis involved in cellular protein catabolic process
GO:0004175Molecular Functionendopeptidase activity
GO:0004298Molecular Functionthreonine-type endopeptidase activity
GO:0005839Cellular Componentproteasome core complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms110.650
SRR2545915Juvenile tuber172.950
SRP108465SRR5643513five period of Gastrodia elata183.070
SRR5643514five period of Gastrodia elata205.410
SRR5643515five period of Gastrodia elata179.130
SRR5643524five period of Gastrodia elata207.020
SRR5643525five period of Gastrodia elata138.440
SRR5643528five period of Gastrodia elata159.290
SRR5643658five period of Gastrodia elata135.230
SRR5643659five period of Gastrodia elata137.650
SRR5643660five period of Gastrodia elata124.040
SRR5643661five period of Gastrodia elata131.240
SRR5643662five period of Gastrodia elata129.340
SRR5643663five period of Gastrodia elata131.520
SRR5643664five period of Gastrodia elata130.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1129.940
SRR6049655Rhizomagastrodiae_C368-T10_good_1254.570
SRR6049656Rhizomagastrodiae_C368-T07_good_1153.170
SRR6049657Rhizomagastrodiae_C368-T07_good_1121.640
SRR6049658Rhizomagastrodiae_C368-T04_good_1123.800
SRR6049659Rhizomagastrodiae_C368-T04_good_1123.220
SRR6049660Rhizomagastrodiae_C368-T01_good_1134.420
SRR6049661Rhizomagastrodiae_C368-T04_good_1136.250
SRR6049662Rhizomagastrodiae_C368-T01_good_1159.740
SRR6049663Rhizomagastrodiae_C368-T01_good_1135.900
SRR6049664Rhizomagastrodiae_C368-T10_good_1198.330
SRR6049665Rhizomagastrodiae_C368-T10_good_1198.330
SRP279888GastroGastrodia elata tuber 222.30
JuvenJuvenile tuber303.75
Mother_GastroMother tuber of Gastrodia elata 159.56
Mother_JuvenMother tuber of Juvenile 274.41