Gene detail

Detail information of GWHGAAEX005984/evm.TU.scaffold_175.42

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2166	Cullins
nr	gi\|672132709\|ref\|XP_008789942.1\|	PREDICTED: cullin-1-like [Phoenix dactylifera]
Swissprot	tr\|Q94AH6\|CUL1_ARATH	Cullin-1
trEMBL	tr\|D7T6D9\|D7T6D9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26060.3}
TAIR	AT4G02570	cullin 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000175	1326507	1370907	-

Transcript Sequence
>GWHTAAEX005984 ATTAACATCTCTTATAGCTCTTTCCACACGGCCCATATTATTTTTAGCACTTTCCCGGCAGCCTAAGGCGGCCCCGCCCCTATATTTCCTTTCTTCTTCGCCGTCTAAGCCATCACCAACTCTCTTTTGAGTTTGTGTGCAGCGAACTTGCCATCGCGATTGGGGAATCGGTATTAGGAAGTCTCGATCTGAAGAAAGGAAATTTCATCAATTTTTTCTTTGAACATGGCGATGCACGAGAGGAAGACGATAGATTTGGAGCAAGGGTGGGAGTTCATGCAAAAGGGCATCACGAAGCTGAAGAACATTCTTGAAGGGCTTCCAGAACCGCAGTTCAGCTCCGAGGACTACATGATGCTCTACACAACCATCTACAATATGTGCACACAAAAACCGCCTCATGATTACTCACAGCAACTTTATGACAAGTATAAGGAGTCATTTGAAGAGTACATTAGTTCTACGGTTTTACCTTCTCTGAGGGAGAAGCATGATGAGTTTATGCTGAGAGAACTGGTTAAAAGATGGTTGAATCACAAGATCATGGTCAGGTGGCTGTCACGATTTTTTCATTATCTTGATCGCTATTTCATTGCTCGGAGGTCTCTCCCTGCGCTTAATGATGTTGGGCTCGCTTGCTTCCGGGATTTGGTTTATAATGAGATAAAAGATATGGTTAGGTATGCGGTAATTTCTTTGATTGACCAAGAGCGTGAAGGAGAGCAGATTGATAGAGCTTTATTGAAAAATGTCTTGGACATTTTTGTTGAAATTGGGCTGGGGAGCATGGAGTGCTATGAAAATGATTTTGAAGCAGCAATGCTTAGGGATACTGCAGCCTATTACTCTCGCAAAGCTTCTAATTGGATTTTGGAGGATTCTTGTCCAGATTACATGCTAAAGGCTGAGGAATGTTTGAAAAGGGAGAAGGATAGGGTTTCCCATTATTTGCATTCTAGCAGTGAGCCAAAACTTTTGGAGAAAGTGCAACATGAGCTTTTGTCAGTAAATGCAACTCAACTCCTTGAAAAGGAGCATTCTGGATGCCATGCTTTACTTCGAGATGACAAGGTGGATGACCTATCAAGGATGTGCAGGCTTTTCTACAGAATTCCACGTGGGCTTGATCCTGTCTCTCAGATTTTTAAACAACATGTCACTGCTGAAGGTACAGCTTTAGTGAAACAAGCAGAAGATGCTGCAAGCAACAAGAAGGCAGAGAAAAAGGATTTAGTTGGTTTGCAAGAACAGGTTTTTGTTAGAAAAGTTATTGAACTGCATGACAAGTACTTGGCTTATGTGAACGATTGTTTTCAGAATCATTCCCTTTTCCACAAGGCTCTTAAAGAAGCTTTTGAGGTCTTCTGCAACAAGGGTGTTGCAGGTAGTTCAAGTGCTGAGTTATTAGCTACCTTTTGTGATAATATACTCAAGAAGGGCGGAAGTGAGAAACTAAGTGACGAAGCTATTGAAGAGACGCTTGAAAAGGTTGTTAAGTTGCTTGCATATATTAGTGATAAAGATCTTTTTGCTGAGTTCTATAGGAAAAAGCTTGCTCGGAGGTTATTATTTGACAAAAGTGCCAATGATGATCATGAGAGGAGCATCCTTACAAAACTAAAGCAGCAATGTGGAGGACAGTTTACTTCAAAGATGGAGGGCATGGTGACAGACTTAACATTGGCAAGAGAAAACCAAGCAAACTTTGAGGAATATCTCAGCAGTAATCCGCAAGTAAACCCAGGAATTGACTTAACTGTCACTGTCCTAACTACTGGTTTCTGGCCCAGCTATAAATCGTTTGACCTCAATCTCCCATATGAGATGGTTAAATGTGTAGAGGTTTTCAAGGAATTCTATCAGACGAAAACTAAACACAGAAAGCTTACATGGATATATTCTCTTGGTACCTGCAACATCAATGGAAAGTTTGAACCCAAAACAATGGAGCTTGTTGTTACAACTTATCAGGCCTCTGCTCTACTCCTTTTTAATTCTTCAGACAGATTTAGTTACTCTGAGATCATGAATCAACTTAATTTGACCGATGATGATGTTGTCAGATTACTGCATTCCCTTTCTTGTGCAAAGTACAAAATTCTTAATAAAGAGCCAAATACTAAGACTATATCTCAAACAGATTATTTTGAATTCAATTCTAAGTTTACTGACAAAATGAGAAGGATTAAGATACCTCTTCCACCCGTGGATGAGAAAAAGAAGGTGATTGAAGATGTAGACAAAGATCGAAGATATGCCATTGATGCTTCTATTGTGCGAATTATGAAGAGCCGGAAAGTCTTGGGCCATCAGCAGTTAGTAATGGAATGTGTTGAGCAACTAGGCCGTATGTTTAAGCCCGACTTCAAGGCAATTAAGAAGCGGATAGAGGATCTGATCACCAGAGACTATTTGGAGCGTGACAAGGACAATCCTAACCTGTTCAGATACCTTGCCTAAGTTGAAAAATAATAAAAAATACGGTATTCTTACAGGTTTGCATATTTGCCTTTGCCCTCTTTAGATGGACCTATCATCACTCAGCAGCAATGCTTTCTGGAAAGGAAAATGCTACACTTACCTGATGATGTATGTCCAGGCGAGCTGATTGATGATGTGGCAAATACTTGCCACCTCATATATATATATATATATATAT

Network for GWHGAAEX005984

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00888.21	Cullin	17	647	5.60E-183
PF10557.8	Cullin_Nedd8	674	736	4.20E-26

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	pathway	mapID
K03347	CUL1, CDC53	Protein processing in endoplasmic reticulum	map04141
		Ubiquitin mediated proteolysis	map04120
		Wnt signaling pathway	map04310
		Hedgehog signaling pathway	map04340
		Hedgehog signaling pathway - fly	map04341
		TGF-beta signaling pathway	map04350
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Oocyte meiosis	map04114
		Circadian rhythm	map04710

Gene Ontology

GO term	Ontology	Name
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0031625	Molecular Function	ubiquitin protein ligase binding
GO:0031461	Cellular Component	cullin-RING ubiquitin ligase complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	311.030
SRP064423	SRR2545915	Juvenile tuber	284.260
SRP108465	SRR5643513	five period of Gastrodia elata	122.240
	SRR5643514	five period of Gastrodia elata	110.850
	SRR5643515	five period of Gastrodia elata	104.780
	SRR5643524	five period of Gastrodia elata	113.230
	SRR5643525	five period of Gastrodia elata	93.480
	SRR5643528	five period of Gastrodia elata	89.090
	SRR5643658	five period of Gastrodia elata	119.450
	SRR5643659	five period of Gastrodia elata	146.230
	SRR5643660	five period of Gastrodia elata	159.940
	SRR5643661	five period of Gastrodia elata	153.590
	SRR5643662	five period of Gastrodia elata	200.770
	SRR5643663	five period of Gastrodia elata	169.150
	SRR5643664	five period of Gastrodia elata	205.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	178.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	146.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	157.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	233.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	260.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	352.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	227.220
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	246.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	137.290
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	178.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	135.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	135.670
SRP279888	Gastro	Gastrodia elata tuber	167.84
	Juven	Juvenile tuber	165.72
	Mother_Gastro	Mother tuber of Gastrodia elata	120.39
	Mother_Juven	Mother tuber of Juvenile	144.83