Gene detail

Detail information of GWHGAAEX005992/evm.TU.scaffold_175.51

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|152981130\|ref\|YP_001352218.1\|	1.00E-89	ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
KOG	KOG0331	0	ATP-dependent RNA helicase
nr	gi\|743855588\|ref\|XP_010941500.1\|	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like [Elaeis guineensis]
Swissprot	tr\|Q9SQV1\|RH40_ARATH	0	DEAD-box ATP-dependent RNA helicase 40
trEMBL	tr\|A0A0A0L544\|A0A0A0L544_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN57060.1}
TAIR	AT3G06480	0	DEAD box RNA helicase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000175	1638589	1697040	-

Transcript Sequence
>GWHTAAEX005992 CTTTACAAAATTACTCGGATGTTTAATGTGTGGCTCGTCGAAGAGAGGTAGAATCGCCCGCAGTTAGCACGTGCGATCGTTTTCCTCCCCTCCCTCGCCGGAAGGGGCCATAGAGAAGCACCTAGGGTTTCTCGGAGAACTCATTCTCGGCGAACAAGGACGAAGGAAGACCTGGTCTCTCAATTTCTTTTCTCATATCGACTAATCTCTTTACCCTTCCTATATTTTCACCTAGTGAGCTTGCCATGACTGCTGCTGAGGCTGCTCCAGTGTCAATGGGTCCTAGCTTTGCTCCAGAAGATCCAACTCTACCAAAGCCCTGGAAAGGGCTCATTGATGGAAGTACTGGTGTCTTATATTATTGGAATCCTGAAACAAATGTTACTCAATATGAGAAGCCAGTTGGTTCTGCACCTTTACTGTCTCCACCTCTTCCTTCTATGGCTTCTCACCTGAATGTTGCTCCTAATCAAGCTGTACAAACTGTGCCATTACATGGCCCCTTACCTTTGCAACAGTCAGGGCAGCCAAGTCTTCAGCAGCCATATCAAATTGTTCAGCAACAGCAGCAAAGTCAGCCACAGGTGTCAATTCAACAACCAATTCAGAAGGTGCCACCCCAACAATTACAGCAACTACCATATCAGCAGCAGCAACCTTTGCAAAATCAACAACCTTTGCAGACTTTACAGCAGCCTTTGCCACAGTATTCACAGATTCAAGAACCTATATATCGGCAATTTCAATACGTGCAAGGGCAAAACATGTCACAGCCCCAAGCTCAATTTCCATATCAGTCTGGGCACCAGCCACATGCATTTCAGTTTCCAATCCAGCAAGGTCAGCAGTTACTAGGACTAAAATTTTCCCATGATTCAACAGGGAAGCAACCTCTGGAATCTCAAGTTGATTATAAACTGGGACAACAGATTTCTGTGTCTCAGACTTCACTTCAGCAAAGTCAACCATTGCCAGTTCCACAGGCTTCACATGAGCCAGGACAGAATTCTCACAGTCAACATACGGCACAGCAGCCAGGAATGCAGTCACACGTGCCACAATTTTTTAAACAACAGGAGATGCTTCAACAAGGGCAGCAATCTGAACGACAGTCACCACAAATTGGTATTACAGGAGCGGTAGATTCTGGTCATCTACAACTTCCTAACTGTCAATCATCAGGTGTAACTTTAAATGCTCAAGTTCAGCAATCTAGTGCTAATGTTTTCCAGCCACAGATGCAGCACCAGCGTAGTGGGCCTATTCCTATTAACCACACACAGGGTGGATTGAGCCACTCACATAAAGCAATTGTGGATTCTGGCCATCATCAAGTGCAAACAGGAAGCTCCAGGATTCCAAATCAAATGGGCCTTTTGATGACTCAGCCTTCCATAAGTTTGAAAACTAGTTATGAAGAAGATCATTGTGAAAGAGGAAGAACTGATTTTTATTCTTCGGGAATGGCTGAGGGATCAGTCATGCATACATTACAGCCTAAACTCGCTCCACTTCCCCTTGCTCAAAATAAACAGGATATGAGATTGGGAACTGCTCCTCCCAAGTTTATCTCTACTGGTCATTCTGTTGATTCTTACATGCTACCTGGGAATGCTATGCCAAACTCTTATGGTCATTCTTCCTTTCCAAATGCGACTCAAGTGAGGCCCTCTCCAAGAATGTTTGAAGCACCAGATCCTCCAAACATCTCGGTAGATGCGTATCGCCAACGTCATGAAGTTACAATAAAGGGAGACAACATTCCTGCCCCATTTATGACATTTGAAGCCACTGGTTTCTCTTCAGAAATCCTGAGAGAGATACATGTCGCTGGTTTCTTGTATCCCACACCAATACAAGCACAAACTTGGCCCGTTGCTTTGCAGAATAGAGACATAGTGGCCATTGCCAAAACTGGTTCTGGAAAGACACTTGGCTATCTTATTCCTGCATTTATCCATCTTAGTCGGTGCCGTAATAATCCCCAATTGGGTCCAACAGTGCTGATATTGTCTCCAACCCGTGAGCTTGCAACACAGATTCAAGATGAAGCACTGAAGTTTGGTCGATCTTCACGAATCTCCTGCACATGTCTCTATGGGGGCGCCCCAAAGGGCCCTCAGTTGAAGGACATTGAACGAGGTGTAGATATTGTTGTGGCAACACCTGGTCGTCTCAACGACATTTTTGAAATGGGAAGGATCAACTTTCGTCAGATATCATTTCTTGTGTTGGATGAAGCAGACAGAATGCTTGATATGGGTTTTGAATTTCAGATACGCAAGATTGTTAATGAGATACCTCCACGAAGACAGACTCTGATGTATACTGCAACGTGGCCTATGGAAGTAAGAAAAATAGCTGCTGATCTGCTCTTAGATCCTGTGCAGGTGAACATTGGCAGTGTTGATGAACTTGTTGCGAATAAGTCCATCACACAGTACGTAGAATTGGTTTCTCAAATGGACAAGCACAAAAGACTCGACCAAATTCTAAGAAGTCAGGAGCGGGGCTCTAAGGTCATTATATTTTGCTCTACTAAAAAGCTCTGTGACCAGCTTGCTCGCAGCATAGGCCGTCCCTTTGGTGCAATTGCTATTCATGGAGACAAGTCTCAAACTGAAAGGGATCATGTTTTAAATCAGTTTCGAACTGGAAGGCAGCCAGTTCTTGTTGCTACTGATGTTGCTGCTCGTGGATTGGACATAAAAGATATTAGGGTAGTTATCAATTATGATTTTCCAACTGGGATTGAGGATTATGTGCACCGCATTGGACGTACGGGAAGGGCAGGTGCTACCGGAGTTTCATACACTTTCTTCACAGATCAAGATTGGAAGCATGCATCGGAGCTAGTGAAATTGCTCGAAGGTGCAAACCAAATTGTTCCACCAGAGATCCGGGAAATGTGCATTCGTTCTGGACCCCCCCATCCTGCTGAAAGGATTCCTCCATCTCATGGAGGAACGAGTCGTTGGGATTCTAATGGTAGCATTCGCGCAGACTTTAATGGCGGCCGAGGCATGCGGGAATCTGGTCGAGGCGGTGTCGTAGGTCGTGGATTTGGCGGGCGTGGCGGCGGTCGGGGAGACTTTTATGTTGATGGGCGTGGCGGGAACAGGGGCCGTGGACTTGGTAGGGGAGGTTGGAATGGGCATGACCGCGGCGGCGGTCCTCGTGATCGTTTTGATGGACGACAGCATGAAGGTGGGAGAGGGAGAGGATTTGGAGGCAGGATGAGAGACCGAAGTTACAGTCGTAGTCCAGAGAAAGGACGCGGTGGTAAGAGATATACTCGGAGCAGAAGCTCCAGCCGAAGCTGGAGCAGGAGTAGAAGCAGGAGTTGGTCTCCAAGAAGCTATAGCCGGAGCAGGAGCCCAAGTCCTAGCAGGAGTTATGATAGGTCAGCCAAAACAGCCGGGGCTGCACCTCCTGTTCGCCGCCGTCGCGTATCAGGGTTCGATGTTCCTTTGCTTCCAGTTGCAGCGGTTGATCAAATTCTTGGATTTGAGGCTCCCCCCTCTATGCTAGCTGCTGGCACTGGCAGTATTCTTTCTGAGCCGAAGCCGCGAATCTCTGGGTACGACGCGTCCCTTGCAAACCGGATGACCCCACAAGGAGCATCAGATGAGAATGGCAAGTAGCTCTGCCATGGACTGGAACAGGGATTGTGCAAAATGAGAAGAGCGATCTTATTTGAAATTTGAAAGGGATCCATCCTCTACTGCAAGACTGGAGTACCTAGTTAGGGACGGGTAGGCCGGTCTGTTTTTGTTTACCTGTGTTTCTCATTTCGTTCAGTCAGATGTATTGCTTTTGTTATTACTTTTTTCTTCTTTTTTCTTCTTCCTTCTTCTTGATGTTTAATCTGATATTCGAATGTTTAGGCGGGTAGCCAACCCCCATTGTATGATTATCACAAGTATTTTTTTCTTATAAACTAATTTTTAGTGGCAAATTCAGCTGTTGCTCGTATATTGTGAGAAACAAGCTTAAAATTTAAAATGCTTATGAGCTTTACTGACTAATTTTTAGCACTTGCATTTTGGTTTTATTTATGTAAAACATATCTCCCATTAAGTGAACTCATGTATTATTTCTTTTAAATAGAACGA

Network for GWHGAAEX005992

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00397.25	WW	22	52	3.80E-07
PF00270.28	DEAD	535	704	3.20E-47
PF00271.30	Helicase_C	741	850	3.20E-32

Protein Sequence

>GWHPAAEX005992
MTAAEAAPVSMGPSFAPEDPTLPKPWKGLIDGSTGVLYYWNPETNVTQYEKPVGSAPLLSPPLPSMASHLNVAPNQAVQTVPLHGPLPLQQSGQPSLQQPYQIVQQQQQSQPQVSIQQPIQKVPPQQLQQLPYQQQQPLQNQQPLQTLQQPLPQYSQIQEPIYRQFQYVQGQNMSQPQAQFPYQSGHQPHAFQFPIQQGQQLLGLKFSHDSTGKQPLESQVDYKLGQQISVSQTSLQQSQPLPVPQASHEPGQNSHSQHTAQQPGMQSHVPQFFKQQEMLQQGQQSERQSPQIGITGAVDSGHLQLPNCQSSGVTLNAQVQQSSANVFQPQMQHQRSGPIPINHTQGGLSHSHKAIVDSGHHQVQTGSSRIPNQMGLLMTQPSISLKTSYEEDHCERGRTDFYSSGMAEGSVMHTLQPKLAPLPLAQNKQDMRLGTAPPKFISTGHSVDSYMLPGNAMPNSYGHSSFPNATQVRPSPRMFEAPDPPNISVDAYRQRHEVTIKGDNIPAPFMTFEATGFSSEILREIHVAGFLYPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAFIHLSRCRNNPQLGPTVLILSPTRELATQIQDEALKFGRSSRISCTCLYGGAPKGPQLKDIERGVDIVVATPGRLNDIFEMGRINFRQISFLVLDEADRMLDMGFEFQIRKIVNEIPPRRQTLMYTATWPMEVRKIAADLLLDPVQVNIGSVDELVANKSITQYVELVSQMDKHKRLDQILRSQERGSKVIIFCSTKKLCDQLARSIGRPFGAIAIHGDKSQTERDHVLNQFRTGRQPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFTDQDWKHASELVKLLEGANQIVPPEIREMCIRSGPPHPAERIPPSHGGTSRWDSNGSIRADFNGGRGMRESGRGGVVGRGFGGRGGGRGDFYVDGRGGNRGRGLGRGGWNGHDRGGGPRDRFDGRQHEGGRGRGFGGRMRDRSYSRSPEKGRGGKRYTRSRSSSRSWSRSRSRSWSPRSYSRSRSPSPSRSYDRSAKTAGAAPPVRRRRVSGFDVPLLPVAAVDQILGFEAPPSMLAAGTGSILSEPKPRISGYDASLANRMTPQGASDENGK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12823	DDX5, DBP2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0005515	Molecular Function	protein binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	54.600
SRP064423	SRR2545915	Juvenile tuber	67.050
SRP108465	SRR5643513	five period of Gastrodia elata	39.410
	SRR5643514	five period of Gastrodia elata	35.590
	SRR5643515	five period of Gastrodia elata	33.370
	SRR5643524	five period of Gastrodia elata	33.540
	SRR5643525	five period of Gastrodia elata	38.200
	SRR5643528	five period of Gastrodia elata	32.900
	SRR5643658	five period of Gastrodia elata	38.830
	SRR5643659	five period of Gastrodia elata	46.460
	SRR5643660	five period of Gastrodia elata	51.490
	SRR5643661	five period of Gastrodia elata	48.520
	SRR5643662	five period of Gastrodia elata	51.880
	SRR5643663	five period of Gastrodia elata	51.890
	SRR5643664	five period of Gastrodia elata	60.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	54.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.440
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	60.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	64.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	69.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	56.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	58.860
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.170
SRP279888	Gastro	Gastrodia elata tuber	70.96
	Juven	Juvenile tuber	101.18
	Mother_Gastro	Mother tuber of Gastrodia elata	48.06
	Mother_Juven	Mother tuber of Juvenile	81.18