Gene detail

Detail information of GWHGAAEX005994/evm.TU.scaffold_175.54

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0942	E3 ubiquitin protein ligase
nr	gi\|743768761\|ref\|XP_010914658.1\|	PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8RWB8\|UPL6_ARATH	E3 ubiquitin-protein ligase UPL6
trEMBL	tr\|D7SYH1\|D7SYH1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22841.3}
TAIR	AT3G17205	ubiquitin protein ligase 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000175	1825548	1919760	-

Transcript Sequence
>GWHTAAEX005994 CCAGATCACATTATTTCGGCGAACCAGCCCCTTCAATTTTTCTTGCTTTTCTTTTTCAATCCCAACGTCCGAGTTGACGTGGTGCCGCAGAGTAGATTTAAGCAGCGGCAATTGTTAGGGTGCGGCTGCAAGTTTCGATTGAAATATGTTCTTCAGCGGGGACTCGACCTCGCGCAGGAGAGTAAATTTGGGGGGACGTAGCTCCAAGGAGAGCGACCGTCAGGTCCTTCTCGAGCAGGCGCGGGTTGAGCGGAAGCGGCGGCTAGCTCTTCGGCAGGAGTTGTCTGCTGCCATCAAAATACAGAAATTCTTTAGAGCGAGGAGAGCTGCTGAATTCGAACAATCCAGGATACGAGAGCAGTTTTGCCATACATATGGTGATCGCTGCCAGAAAGCAGATCTGGGTTGCTTTAGTGTTGATTCAAACTTCTTGCCCCAGCTGCTCCTTTTCTTCTCAGTAAAGAGTAGAAGTGATGTAGCTATTTTAATGGAGACATGCCGATTAATACTTCAAGCTGTTCAAAACGGCAGAGATCTTGTCAGTATTTTCTCTGAGTCAGATTACTCTATTAAGCAGTCAGTTGTTGAAATGAGAGTAAAAAAACTTGTACTTGCCTGCATGAAAACAATCCACGATAACAGAGGTGACTTGAAGGATCTAATCCTGATGCCATCTGATATGCCTACATCTATTTTATTGGATTCAGTATCTGTCTTAATAAACCCTGATCTTCCATGGGCTTGCAAGGTTATTGGTTACCTTTTACAGCAAAAGATCTTTGTTTTATTACGTGGCATCATTCTCTTCAGCATGCCTAACCTGCATGAGCCAGAAATTTGTGAGAGGATGTCTTCGTTGGAGAATGTTCTTGCTCTAATTACTTTTCACGCTAGCGAACATCGATGCAGCTGTTTAGATGCAGATCCAAAATTAAACTTCTTGTTGCAAATATTGTCAATCCCTTTCCTATGGCGTCATCTTCCATATTATAAGGGGGTTTTCTTGGCCCAAAAATTGGCAAAATTCTATATCCATCAATTGGCACTTTGTTTGCCTTGCAATGAATCTATCCTTCCAGATAATGTATCTCATGAATTTCCAGGTTTTGCCTGTCTACTTGGTAATTTGTTAGAAGTTTCTGTGGCAATCTTTTCAGATCTAACCTACAATATCAATACTGCCATGGACTTCACATTTACCTTAACCTTTTTGTTTGAGGCACTTCCACAATTGAAGTCAGCAGCTAGAGCAGAGTATTTTGATTACGAAGATGAGATGAGCATGAATAAGGGAACTTACAAATATTTGGATACAACTTTAGAAAGTCAGATAAAAAATGCAATGGACTCGCGACTTTTTCAACTTTTGGTAAATGCATTATTTAGGGATACACCACCTGGTTGTCATAGGTATGAAACGGCACCATCCGAAGAAGTGGTTGACTCCATTGGTTATATTTGTGCGTTTCTTCATGTGGCATTTAGTACATTGCCTTCTGAACATATAATGACTGGAGTAGCTTATAGAACTGATATTGCTCTTATACTCTGGAGTTTTATTAAGTACTGTCAAGAAAATCAAATACGGCCATGTTTTCCAAAGCTCACAGCATATATTCCTGGTGATGCTTCTTGTTGGGTACTATCTTTGGCTGTTTTCTGTCCTGTTTTTAAGTATATGCTGACAATCATGGATAGTGATGAATTCTATGAGATGGAAAAACCACTATCGTTGAGGGATATGAGGTTATTAGTTATCATATTAAAAGAGGCTTTATGGCAACTACTTTGGGTGGTACCTTCGGTTAACATATCTCCTCAGAATTTTGAAGCTGGTATATTTGTCAATAATAAGCTTTCTATTGAAGCAATAAGAAATAGAGCTCGTGCTATGATATCTGAACTCTTGAGCCAGTTACAAGATTGGAACAATAGAAGGCCATTCACCTCGACATCTGATTTTCATGCACTTGATGCAACTAGTGAAGCTTTTGCAGCTCAGGCCTTAACTGAAAGTAGCAGAGCATCTGAAATACTGAAGCAGGCTCCATTTCTGGTTCCATTTACAAGTAGGGTTAAAATATTCAATTCACAACTAGCTGCTTCAAAACAACAAAATGGTGCATTCCCTCTACCCAGAAATCGGTTTCGGATAAGAAGAAATAGAATTTTTGAAGATGCATTCACTCAGTTGAGCATGCTATCAGCAGAAGAACTCAGGGGCTCGATTCGTGTATCTTTTCTCAATGAATTTGGAGTAGATGAAGTTGGGATTGATGGAGGTGGTATCTTCAAGGATTTCATGGAGAGCATTACTAAAGCAGCTTTTAATGTGCAGTATGGGCTATTTAAGGAAACTATTGATCGCCTTTTATATCCAAATCCGGGGTCAGGAGTAATTCATGAGCAACATCTTCATTATTTTTACTTTCTTGGAACTCTACTTGGAAAGGCAATGTATGAAGGTATTCTTGTTGATATACCATTTGCAGCTTTTTTCCTCAGCAAATTGAAACAAAAGCACAACTTTTTGAATGACTTACCTTCACTGGATCCAGAGTTGTATCGTCATCTCCTATTTCTAAAGCATTTTCAAGGTGATGTTGGAGACTTAGAACTCTATTTTGTTATTATCAACAATGATTATGGGGAACAAAAAGAAGAAGAGTTAATTCCTGGTGGAAAAGATATTCATGTTACAAAGGAAAATGTTATAACTTATATTCACCTTGTTGCCAATCACCGATTAAACTATCAGATTCGGCATCAAAGTTCACACTTCTTACGGGGATTCCAGCAACTTGTACAGAAAGAATGGATTGAAATGTTCAGTGAGCATGAAATTCAGATTTTGATATCAGGCTCACTTGAGAATTTTGATATGGATGATTTGCGTTCTAATGCTAACTATTCAGGTGGTTATGATCAAAGTCATCCCGTAATTATTATGTTCTGGGAAGTTGTGAAAAACTTCTCGTTTGAATATCAGAAAAAATTTCTCAAGTTTGTTACAGGATGTTCTCGTGGACCCCTTCTTGGATTTAGATACCTTGAACCTAAATTCTGCGTACAAAGAGCCGCTTCTTTGCATGCTACTGACGACGATTTGGATCGTTTGCCCACTAGCGCAACTTGCATGAATTTGCTGAAGCTTCCTCCATACAAAAGTATAGAGCAAATGCAAAACAAATTGATCTATGCCATAAATGCGGATGCCGGTTTTGATCTAAGTTAAGATTGATTTGTGCTTCCGATGAAAGACTGTTTTGACGATGCTTCTGGCTGCTGTGATTGATATTAAGAATTTGGGAGTGGAATATTCTACAATTTCCAAGGTTAAGAAGGACTTCATTCTTACACACAGCATGGCAAAGATTCAAGCTTCTCAAGCTCCAAATATCTGAGTTGTACAAAAAAGGTTGTGCTAGTATATGTATATATATATATATATATATTAACAGGGTAAACAAAATCATACTGTTGTACATAATATGCTTTAGTCATGATATTTAAAATGTTCTTTTTATGATTTATCTCAATTTTAAACCATACTTTGTTTCATGGCATCAGTGAAACAACAAAACTGGAACCTCGTACATTTTTATCAAATTTTATTGTATTACATGCCAGACCACATGTTATTTTTATATCAACATCACAAATAATCTTT

Network for GWHGAAEX005994

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00632.24	HECT	723	1029	8.90E-93

Protein Sequence

>GWHPAAEX005994
MFFSGDSTSRRRVNLGGRSSKESDRQVLLEQARVERKRRLALRQELSAAIKIQKFFRARRAAEFEQSRIREQFCHTYGDRCQKADLGCFSVDSNFLPQLLLFFSVKSRSDVAILMETCRLILQAVQNGRDLVSIFSESDYSIKQSVVEMRVKKLVLACMKTIHDNRGDLKDLILMPSDMPTSILLDSVSVLINPDLPWACKVIGYLLQQKIFVLLRGIILFSMPNLHEPEICERMSSLENVLALITFHASEHRCSCLDADPKLNFLLQILSIPFLWRHLPYYKGVFLAQKLAKFYIHQLALCLPCNESILPDNVSHEFPGFACLLGNLLEVSVAIFSDLTYNINTAMDFTFTLTFLFEALPQLKSAARAEYFDYEDEMSMNKGTYKYLDTTLESQIKNAMDSRLFQLLVNALFRDTPPGCHRYETAPSEEVVDSIGYICAFLHVAFSTLPSEHIMTGVAYRTDIALILWSFIKYCQENQIRPCFPKLTAYIPGDASCWVLSLAVFCPVFKYMLTIMDSDEFYEMEKPLSLRDMRLLVIILKEALWQLLWVVPSVNISPQNFEAGIFVNNKLSIEAIRNRARAMISELLSQLQDWNNRRPFTSTSDFHALDATSEAFAAQALTESSRASEILKQAPFLVPFTSRVKIFNSQLAASKQQNGAFPLPRNRFRIRRNRIFEDAFTQLSMLSAEELRGSIRVSFLNEFGVDEVGIDGGGIFKDFMESITKAAFNVQYGLFKETIDRLLYPNPGSGVIHEQHLHYFYFLGTLLGKAMYEGILVDIPFAAFFLSKLKQKHNFLNDLPSLDPELYRHLLFLKHFQGDVGDLELYFVIINNDYGEQKEEELIPGGKDIHVTKENVITYIHLVANHRLNYQIRHQSSHFLRGFQQLVQKEWIEMFSEHEIQILISGSLENFDMDDLRSNANYSGGYDQSHPVIIMFWEVVKNFSFEYQKKFLKFVTGCSRGPLLGFRYLEPKFCVQRAASLHATDDDLDRLPTSATCMNLLKLPPYKSIEQMQNKLIYAINADAGFDLS

Gene family

Gene family	subfamily
Ubiquitin Family	HECT

KEGG pathway

KO	Enzyme	pathway	mapID
K10589	UBE3C	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name
GO:0004842	Molecular Function	ubiquitin-protein transferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	42.430
SRP064423	SRR2545915	Juvenile tuber	33.420
SRP108465	SRR5643513	five period of Gastrodia elata	20.330
	SRR5643514	five period of Gastrodia elata	22.090
	SRR5643515	five period of Gastrodia elata	20.950
	SRR5643524	five period of Gastrodia elata	23.480
	SRR5643525	five period of Gastrodia elata	19.920
	SRR5643528	five period of Gastrodia elata	17.570
	SRR5643658	five period of Gastrodia elata	24.500
	SRR5643659	five period of Gastrodia elata	17.590
	SRR5643660	five period of Gastrodia elata	20.620
	SRR5643661	five period of Gastrodia elata	17.690
	SRR5643662	five period of Gastrodia elata	22.210
	SRR5643663	five period of Gastrodia elata	19.300
	SRR5643664	five period of Gastrodia elata	22.880
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.930
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.330
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.980
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.660
SRP279888	Gastro	Gastrodia elata tuber	24.68
	Juven	Juvenile tuber	41.27
	Mother_Gastro	Mother tuber of Gastrodia elata	24.13
	Mother_Juven	Mother tuber of Juvenile	43.71