Detail information of GWHGAAEX005996/evm.TU.scaffold_175.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|312137112|ref|YP_004004449.1| | 1.00E-34 | 30S ribosomal protein S9 [Methanothermus fervidus DSM 2088] |
| KOG | KOG1753 | 2.00E-80 | 40S ribosomal protein S16 |
| nr | gi|695013510|ref|XP_009393541.1| | 5.12E-85 | PREDICTED: 40S ribosomal protein S16-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O22647|RS16_FRIAG | 1.00E-86 | 40S ribosomal protein S16 |
| trEMBL | tr|K4BW97|K4BW97_SOLLC | 2.00E-84 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc05g005690.1.1} |
| TAIR | AT2G09990 | 2.00E-80 | Ribosomal protein S5 domain 2-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000175 | 1995236 | 1995853 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005996
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00380.18 | Ribosomal_S9 | 73 | 205 | 2.30E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02960 | RP-S16e, RPS16 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 148.290 |
| SRR2545915 | Juvenile tuber | 230.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 221.300 |
| SRR5643514 | five period of Gastrodia elata | 237.040 | |
| SRR5643515 | five period of Gastrodia elata | 207.510 | |
| SRR5643524 | five period of Gastrodia elata | 228.220 | |
| SRR5643525 | five period of Gastrodia elata | 63.720 | |
| SRR5643528 | five period of Gastrodia elata | 96.220 | |
| SRR5643658 | five period of Gastrodia elata | 52.230 | |
| SRR5643659 | five period of Gastrodia elata | 203.490 | |
| SRR5643660 | five period of Gastrodia elata | 206.590 | |
| SRR5643661 | five period of Gastrodia elata | 235.280 | |
| SRR5643662 | five period of Gastrodia elata | 216.310 | |
| SRR5643663 | five period of Gastrodia elata | 200.400 | |
| SRR5643664 | five period of Gastrodia elata | 201.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 306.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 515.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 357.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 296.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 274.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 244.120 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 335.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 316.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 412.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 396.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 368.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 368.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 394.57 |
| Juven | Juvenile tuber | 432.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 108.89 | |
| Mother_Juven | Mother tuber of Juvenile | 231.23 |