Detail information of GWHGAAEX006001/evm.TU.scaffold_176.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|152992395|ref|YP_001358116.1| | 4.00E-27 | copper resistance protein A [Sulfurovum sp. NBC37-1] |
| KOG | KOG1263 | 6.00E-81 | Multicopper oxidases |
| nr | gi|695024638|ref|XP_009399541.1| | 4.74E-100 | PREDICTED: L-ascorbate oxidase [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P14133|ASO_CUCSA | 7.00E-76 | L-ascorbate oxidase (Precursor) |
| trEMBL | tr|M0SVL4|M0SVL4_MUSAM | 5.00E-101 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P04350_001} |
| TAIR | AT4G39830 | 6.00E-81 | Cupredoxin superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000183 | 170367 | 171752 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006001
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07732.14 | Cu-oxidase_3 | 31 | 131 | 6.60E-41 |
| PF00394.21 | Cu-oxidase | 145 | 237 | 2.00E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0005507 | Molecular Function | copper ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.790 |
| SRR5643514 | five period of Gastrodia elata | 4.690 | |
| SRR5643515 | five period of Gastrodia elata | 2.280 | |
| SRR5643524 | five period of Gastrodia elata | 2.820 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.620 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 1.890 | |
| SRR5643660 | five period of Gastrodia elata | 0.760 | |
| SRR5643661 | five period of Gastrodia elata | 0.770 | |
| SRR5643662 | five period of Gastrodia elata | 1.750 | |
| SRR5643663 | five period of Gastrodia elata | 1.750 | |
| SRR5643664 | five period of Gastrodia elata | 2.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.770 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.61 |
| Juven | Juvenile tuber | 0.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.35 | |
| Mother_Juven | Mother tuber of Juvenile | 0.41 |