Detail information of GWHGAAEX006002/evm.TU.scaffold_176.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|375147536|ref|YP_005009977.1| | 5.00E-09 | multicopper oxidase type 3 [Niastella koreensis GR20-10] |
| KOG | KOG1263 | 2.00E-129 | Multicopper oxidases |
| nr | gi|672134301|ref|XP_008790802.1| | 2.39E-148 | PREDICTED: L-ascorbate oxidase-like [Phoenix dactylifera] |
| Swissprot | tr|P14133|ASO_CUCSA | 6.00E-100 | L-ascorbate oxidase (Precursor) |
| trEMBL | tr|M1A3P6|M1A3P6_SOLTU | 2.00E-142 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400014067} |
| TAIR | AT4G39830 | 2.00E-129 | Cupredoxin superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000183 | 172473 | 173777 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006002
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module13 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00394.21 | Cu-oxidase | 1 | 65 | 3.60E-18 |
| PF07731.13 | Cu-oxidase_2 | 159 | 293 | 8.10E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0005507 | Molecular Function | copper ion binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.310 |
| SRR2545915 | Juvenile tuber | 0.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.490 |
| SRR5643514 | five period of Gastrodia elata | 2.660 | |
| SRR5643515 | five period of Gastrodia elata | 5.240 | |
| SRR5643524 | five period of Gastrodia elata | 3.000 | |
| SRR5643525 | five period of Gastrodia elata | 9.450 | |
| SRR5643528 | five period of Gastrodia elata | 1.240 | |
| SRR5643658 | five period of Gastrodia elata | 4.030 | |
| SRR5643659 | five period of Gastrodia elata | 1.590 | |
| SRR5643660 | five period of Gastrodia elata | 0.810 | |
| SRR5643661 | five period of Gastrodia elata | 1.760 | |
| SRR5643662 | five period of Gastrodia elata | 4.150 | |
| SRR5643663 | five period of Gastrodia elata | 2.950 | |
| SRR5643664 | five period of Gastrodia elata | 49.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.090 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.470 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.48 |
| Juven | Juvenile tuber | 0.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.60 | |
| Mother_Juven | Mother tuber of Juvenile | 0.86 |