Gene detail

Detail information of GWHGAAEX006003/evm.TU.scaffold_176.4

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0167	0	FOG: Armadillo/beta-catenin-like repeats
nr	gi\|743849372\|ref\|XP_010939610.1\|	0	PREDICTED: uncharacterized protein LOC105058387 [Elaeis guineensis]
Swissprot	tr\|O22193\|PUB4_ARATH	3.00E-09	U-box domain-containing protein 4
trEMBL	tr\|M0TTD9\|M0TTD9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P24860_001}
TAIR	AT1G77460	0	Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000183	174045	213839	-

Transcript Sequence
>GWHTAAEX006003 GAGGAGAGAGGAGAGAGGAGAGAGATAGACCATCTGTTTCTCTCTCGTGTCTCGTTCGAAAGATCTACTCTCTGACTTCCCTCTGTTGTGTGGCCACTGGATCTCGCCGTGACCAGAGATCCTTCTACTGCACGACGCAGTGCAGGTTGTAAAGTGTGAGGCGTTCTGGATCTACTTAACTGAAGAAGGGATTGATCACTAAGTAAAGCTGGCGGCAACAATTGCTTGGAGATATGCCGGCAGCAATGGTGGCAGCCAGGGATCTTTGGATCTGGAGAGAAATGTGGATGGTAAAGTTCAAGACTCAGAGCCGTCTACGCCACATTCTTTGTTGAAAATGAGTTCAAGGGATCGTGGGAACATTGAAGATACAGATGGAACATTGTCAAGTGTTGCACAATGCATTGAGAAACTACGGCACAATTCCTCGACAGCATCTGAGAAAGAGAACTCTCTGAAGCAATTGCAAGAACTTATTCAAACACGTGAAAAAGCATTTGGAGCTGTTGGTTCTCATTCACAAGCAGTTCCAATACTTGTTTCTCTTCTTAGGTCTGGGTCTCTTGGGGTAAAGATGTTGGCTGCAACTGTTTTGGGATCTTTATGTGCAGAAGAGGAACTAAGAATGAAAGTACTGCTAGGTGGTTGTATACCACCGCTTCTTACTCTTCTCAAGTCCAACTTAGCTGAATGCCAAATGGCAGCAGCAGAAACCATCTATTCTGTTTCTCAAGGAGGTACAAGGGATCATGTAGGTTCAAAGATCTTCTCAACTGAAGGAGTTGTTCCTGTTTTATGGGAGCAACTAAAAAATGGTCTCAGTAATGGAAGTGTAGTCGATACTTTACTTACTGGAGCACTGAAAAATCTATCAAAGTGTAAAGAGGGCTTCTGGACAGCAACAACAGACTCCGGTGGGGTGGATATACTAATTAATCTCTTATTTAAGGGGCAATCTAGCAGTATAGCTAATGTTTGCTATCTCCTTGGATGTATGATAATGGAGGACACTTCTGTTTGTTCAAGGATCATTGCTTCAAATACTACCAAACAACTCCTCAAATTGCTAGGATCTGGCAATGAAACATCAGTTAGAGCTGAGGCTGCAGGCGCTCTAAAATCTCTGTCTGCACAGTGCAAAGATGCTAGGCGTGAGATAGCTAATTCCAACGGTATACCAGCTCTTATAAATGCTACAATAGCTCCATCGAAAGAATTCATGCAAGGGGAAGCAGCTCAAGCATTGCAGGAAAATGCAATGTGTGCCCTGGCTAATATTTCTGGCGGCTTGTCATTTGTCATTTCCAGCCTTGGTGAAAGTCTGGAGTCGTGCAATTCGTCTGCACAGAGTGCTGATACGCTGGGGGCGTTAGCTTCAGCTATGATGATTTATGATTCTAATGCTGAATCTGTCAGACCATCAGACCCTTTTACTATAGAGAAAATATTGGTTAAGCAATTCAAAACAGCAGTGCCTTTCCTTGTACAAGAACGCACTATAGAAGCCTTAGCCAGTCTGTATGGGAATGCTATACTCGCTAGGGTGCTTAACAACGCTGATGCAAAGCACTTGCTGGTTGGTTTGATCACCATGGCAACAGGTGAAGCACAGCTTGAGCTTATTAAGTCTCTTCTTACACTCTGCAACAAAGAGTGCAGCTTATGGCATGCATTGCAAGGTCGCCAGGGTGTTCAGCTTTTAATTTCACTACTTGGTCTGTCTTCAGAGCAACAACAGGAGTGTGCAGTTTCACTGCTTTGCCTTCTATCCGATGAAAATAGTGAAAGCAAATGGGCCATAACTGCTGCTGGAGGCATACCTCCTCTAGTTCAGATTTTGGAAACTGGGTCTTCAAAGGCTAAAGAGGATTCTGCTATGATACTTGGGAACCTCTGTAACCACAGTGAGGATATTAGAGCTTGTGTTCAAAGCGCTGATGCTGTTCCTGCTTTGTTATGGTTGCTGAAAAATGGTAGTGAAAATGGAAAAGAGATTGCTGCAAGGACAGTAAACCATCTCATCCATAAGTCAGACACTGGGACTATCAGCCAGCTGTCTGCCTTACTAATAAGTGAACAACCAGAGTCTAAAGTACATGTTTTGGATGCTCTGAGAAGTTTGCTTTCTGTGTCACCATTTAATGATATACTGCATGAAGGTAGTGCAGCAAATGATGCTATCCAGACAATGATAAAAATCCTGAACTCTGCAAAGGAGGAAACTCAAGCTAAATCAGCTTCTGTTCTGGCTGAACTTTTTCATTTTCGTAAAGATTTGAGAGAAAGTCATATATCTGTCGATGCCCTTTCGGCAGTCATGAATTTGCTCAATGACGAAACCAAAAGAATCCTGGTGGAGGCCTGCCGTTGTCTTGCTGCTATTTTTCTTTCAGTTAAAAAAAACAAGGAAGTTGCTTCCATTGCAAGCGATGCGTATGCTCAATTAGTTCTTCTTTCTAGCTCCTCCATTCTTGAAGTGGCAGAACAAGCAACATGTGCTTTGGCTAACCTTTTATTGGATAATGAAATTTCAACTCAGGCAAGTCCTGAAAAGATTTTATTCCCTGTCACTCGAGTTCTAAGAGAAGGCACTAGTGATGGAAGAACTCATGCTGCTGCTGCTGTTGCTCGTCTCTTACAATATCATTCTGCTGATGATGCATTATTTGATAGCATAAACAGAAGTGGCACAGTTCTAGCTCTTGCTACACTTCTGGAATCTTCCAATATTGATTCTGCGGCTGCTTCCGAGGTTCTTCATGCACTGGCTTTGCTTCCTAGAGCAAATGAAGCTTTTGGTCATGTAGAACCTCCATGTGCTGTTCTTGCTGAATATCCTCATACCATCATTCCTTTGGTCTCATGTGCTGCCGATGGAGCGCCCACACTGCAAGATAAATCTATAGAAGTTTTAGCTAGATTGTGCTGTTTTCAGCCTAGTATTTTGGGTTCTATAGTGTCAAAAAAGATTGGGTGTGTAGTGTCAATTGCAAGACGAGTGATTGACTCCAGTCACCTTAAAGTTAAAGTGGGGGGGACTGCTCTTCTTATCTGTGCTTCAATGGAGAACAGCCAGGAACTTATAGAATATCTGAATGAGTCAAGTTTATGCACTAACTTGATTCATGCACTTGTATCCATGCTTCAAAATTCAAGATTATTATCCGATTATGGTGACATAGATGTATGCATCTGCAGGTGTCCTAAAGAGTACCATAAAAATGCTGAAATTAAGTCCAACACTGCAATAATTTATGGTAATATGGTTTCCATTTGGCTACTCTGCTTACTTGCTTGTCATGAGAAGAAAAGCAAGTCAGTTATCATGGAGTTTGAAGCGCTTGATTTTCTTACTGAGAAGATTTCACAGTACTATTTAGCTTCACAGGGTGATTCAAGGGAAGAAAATATTGCATGGGTTTGTGCTTTACTGCTTGCTTTGCTTTTTCAAGACCGGGATATTATCCGCTCGAATACCATATTGCATTCCATTCCAGTGTTAGCAAGTTTATTGCGATCAGAGGAATTGGCAAACCGATATTTCGCTGCACAAGCTCTTACAAGTTTGATTTGTAATGGTAGTAGAGGTACATTGTTGGCCGTTGCAAACTCTGGAGCTTCTGGTGGGCTCATTTCATTGCTGGGCTGTGCAGATACAGATATATCTGATTTCTTGGAGCTTTCAGAGGAGTTTCATTTGGTACGGAATCCAGAGCAAATTGCCTTGGAGAAACTGTTCAGAGTTGATGATATTAGGGTTGGTGCAACATCTAGAAAAGCCATTCCTGCACTTGTTGATCTGCTCAAACCGATCCCAGATCGTCCTGGTGCCCCTTTTCTTGCATTGGGTCTTCTGAATCAACTTGCTGTAGATTGTTCCCCAAATAAGCTTGTAATGGTAGAAGCCGGGGCACTCGAGGCCCTTACAAAGTACCTATCACTTGGCCCACAAGATGCCACGGAAGAGGCTGCTACAGATTTACTGGGGATTCTATTCAACAGTGCAGAGATAAGGCTACATGAATCTGCATTTAGTGCTGTTAATCAACTTGTGGCAGTCTTAAGGCTTGGCGGAAGAAATTCCAGATATAGTGCAGCAAAAGCATTGGAAAACTTGTTTTCATCTGACCATATCAGAAATAGTGAATCTGCTCGTCAAGCTGTTCAACCACTAGTTGAAATACTTAATACAGGCTTAGAACGAGAGCAACATGCTTCAATTGCTGCACTTGTTCGATTGTTGGGTGACAATCCTTCTAGAGCCCTAGCTGTTGGGGATGCTGAGATGAATGCTGTTGATGTTCTCTGCAGAATTATTTCTTCTAACTGTTCCGTGGAGCTGAAGGGAAATGCGGCAGAGTTATGTGGTGTCCTATTTGGAAATGTGAGGGTTCGGTCCACTATGGCTGCAGCCCGTTGCATAGAACCACTTGTGGCACTCCTTGTTAATGAGTTTAGCTCTGCTCAGCATTCGGCAGTTCGAGCTTTGGAAAAACTTTTGGATGACGAGCAACTGGCAGAAATAATTGCTTCCCATGGAGCTATTATTCCTCTGGTCAGTCTTTTGTTTGGTCGCAATTACATACTCCACGAGGCAGTGTCTAGAGCTTTGGTTAAGTTAGGCAGAGATAGACCATCTTCAAAAATGGAAATGGTGAAAGTTGGAGTTATTGAAAACATACTTAACATCCTTGAAGAAGCTCCTGATTTTCTCTGTGCTGCATTTGCAGAATTGCTTCGAATTCTTACCAACAATGCTGACATTGCAAAAGGCCCTTCGGCAGCCAAAGTTGTATTGCCTCTTTTTTCTCTGTTAATAAAACCAGAGATTGGTCCTGAAGGGCAGCATACTGTGCTACAAGTTCTTGTAAATATTTTAGAGCTACCTCAATGTCGAGCGGATTATAATCTTACACCTCATCAGGCTGTTGAACCAGTTATATCTTTACTGGATTCACCAACTCTACCTGTGAAGCAATTGGCTGCGGAACTTTTGTCCCATCTTCTGCTGGAGGAACACTTGCAAAAGGATCCAATAACAGAGCTAGCTGTTGGCCCTCTAATACAAATTCTTGGATCAGGTGTTCATGTCTTACAACAAAGAGCCATAAAAGCTCTTGTTAACATGTCTCTTACTTGGTCAAATACAATTGCAAAAGAGGGAGGCGTATATGAACTGTCCAAAGTTATTTTGCAGGCTGATCCTCCATTGCCTCATGCTTTGTGGGAATCTGCTGCTTCTGTTTTATCCAGCATTCTTCAATATAGTTCAGAATATTTCTTGGAGGTTCCTGTAGCTGTATTGGTACAGTTGCTTCGATCTGGAACTGAAAGTACTGTTATTGGTGCATTAAATGCCTTGCTTATTCTTGAAAGTGATGATTCAACTAGTGCCGAAGCTATGGTTGAAAGTGGTGCTGTTGAAGCACTTTTGGATCTCCTAAAAAGTCATCAGTGCGAGGAAACTGCTGCAAGATTGTTGGAGACCTTACTAAATAATATGAAGATAAGAGAAACAAAAGTTGCTAAGTCGTCAATCTCTCCGATATCCATGTATCTCTTAGATCCTCAAACACAGTCCCAACAAGGAAGGTTGCTAGCCGCTCTTGCTCTGGGTGATCTTTTCCAGAATGAGGGCCTTGCACGAACTACAGATGCTGGATTAGCCTGTCGTGCACTTGTAAATCTTCTTGAAGAGCAGCCAACTGAAGAGATGAAAGTGGTGGCCATCTGCGCCCTGCAGAATCTTGTAATGTACAGCCGAGCAAATAAAAGAGCTGTTGCAGAAGCTGGTGGTATCCAGGTCATATTGGACCTTATAAGCTCTGGCCATTCAGACACATCTGTTCAAGCTGCAATGTTTATCAAACTTTTATTCTCTACTCATACTGTTCAAGAGTATGCATCCAGTGAATCAGTTAGATCCATCACTTCTGCTATTGAAAAGGACTTGTGGGCTAGTGGAGGTGTGAATGAGGAATATTTGAAGGCATTAAATGCACTGCTTAGCAATTTTCCTCGCTTAAGAGGTACTGAGCCTACTACCCTCAGTATTCCACATCTTGTTACTTCCCTCAAAACTGGCTCTGAGGCTACTCAAGAAGCAGCTCTAGAATCACTTTTTCTTCTAAGACAAGCATGGTCAGCCTGCCCTGTTGAAGTTTTCAAAGCTCAATCAGTTGCTGCATCTGAAGCCATCCCTTTGCTTCAATATTTGATTCAATCTGGTCCGCCACGATTTCAGGAAAAGGTTGAACTGCTTTTGCAGTGCTTACCAGGGACACTTACAGTCACAATAAAGCGTGGGACCAATTTGCGGCAGTCTGTTGGGAACCCTAGTGTATACTGCAAACTAACACTTGGCAGCAGTCCACCACGGCAAACCAAGATTGTGTCAACTGGTCCTACGCCTGAATGGGATGAAGCCTTTGCCTGGGCTTTTGACAGCCCACCCAAAGGACAAAAGCTCCACATTTCCTGCAAGAATAAGAGCAAAATTGGGAAGAGCTCCTTCGGAAAAGTTACAATACAGATTGATCGGGTCGTAATGCTGGGATCTGTTGCCGGCGAATATACGCTGCTCCCTGTCAGCAAGAGTGGGCCCCCTCGAAATCTGGAAATAGAGTTCCAGTGGTCGAATAAGTAACACAATATCTATATATATATACGTATAATATAATTTTTTACCCTTGCTTGAATGTCAATGGGAAGAAGCCTTTGATTCTTGCATGTCTGTCTTACTGTACATAGAAGAGAATTATGTTTTCATGCCTCTTGTGAGAAGGGATTGTTTCTGGGAATTGTTTGCTTCGTTTGATACGAATTATTATCTATTCTTTATTTTTCGTTTTCATGCCTTTTAAAACGATGTATACATATATATAAAATCTATGTAATATTTTCTATAGCAATTTCCTTTTTTAATGTGAGGATGAATAAAGTTTGTTTCCATGTTTTGGGGGGTTTAATACGACTTTAGAGGATTTTAGTTCTACGGCAGCA

Network for GWHGAAEX006003

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.29	C2	1981	2072	3.00E-11

Protein Sequence

>GWHPAAEX006003
MSSRDRGNIEDTDGTLSSVAQCIEKLRHNSSTASEKENSLKQLQELIQTREKAFGAVGSHSQAVPILVSLLRSGSLGVKMLAATVLGSLCAEEELRMKVLLGGCIPPLLTLLKSNLAECQMAAAETIYSVSQGGTRDHVGSKIFSTEGVVPVLWEQLKNGLSNGSVVDTLLTGALKNLSKCKEGFWTATTDSGGVDILINLLFKGQSSSIANVCYLLGCMIMEDTSVCSRIIASNTTKQLLKLLGSGNETSVRAEAAGALKSLSAQCKDARREIANSNGIPALINATIAPSKEFMQGEAAQALQENAMCALANISGGLSFVISSLGESLESCNSSAQSADTLGALASAMMIYDSNAESVRPSDPFTIEKILVKQFKTAVPFLVQERTIEALASLYGNAILARVLNNADAKHLLVGLITMATGEAQLELIKSLLTLCNKECSLWHALQGRQGVQLLISLLGLSSEQQQECAVSLLCLLSDENSESKWAITAAGGIPPLVQILETGSSKAKEDSAMILGNLCNHSEDIRACVQSADAVPALLWLLKNGSENGKEIAARTVNHLIHKSDTGTISQLSALLISEQPESKVHVLDALRSLLSVSPFNDILHEGSAANDAIQTMIKILNSAKEETQAKSASVLAELFHFRKDLRESHISVDALSAVMNLLNDETKRILVEACRCLAAIFLSVKKNKEVASIASDAYAQLVLLSSSSILEVAEQATCALANLLLDNEISTQASPEKILFPVTRVLREGTSDGRTHAAAAVARLLQYHSADDALFDSINRSGTVLALATLLESSNIDSAAASEVLHALALLPRANEAFGHVEPPCAVLAEYPHTIIPLVSCAADGAPTLQDKSIEVLARLCCFQPSILGSIVSKKIGCVVSIARRVIDSSHLKVKVGGTALLICASMENSQELIEYLNESSLCTNLIHALVSMLQNSRLLSDYGDIDVCICRCPKEYHKNAEIKSNTAIIYGNMVSIWLLCLLACHEKKSKSVIMEFEALDFLTEKISQYYLASQGDSREENIAWVCALLLALLFQDRDIIRSNTILHSIPVLASLLRSEELANRYFAAQALTSLICNGSRGTLLAVANSGASGGLISLLGCADTDISDFLELSEEFHLVRNPEQIALEKLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLNQLAVDCSPNKLVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFNSAEIRLHESAFSAVNQLVAVLRLGGRNSRYSAAKALENLFSSDHIRNSESARQAVQPLVEILNTGLEREQHASIAALVRLLGDNPSRALAVGDAEMNAVDVLCRIISSNCSVELKGNAAELCGVLFGNVRVRSTMAAARCIEPLVALLVNEFSSAQHSAVRALEKLLDDEQLAEIIASHGAIIPLVSLLFGRNYILHEAVSRALVKLGRDRPSSKMEMVKVGVIENILNILEEAPDFLCAAFAELLRILTNNADIAKGPSAAKVVLPLFSLLIKPEIGPEGQHTVLQVLVNILELPQCRADYNLTPHQAVEPVISLLDSPTLPVKQLAAELLSHLLLEEHLQKDPITELAVGPLIQILGSGVHVLQQRAIKALVNMSLTWSNTIAKEGGVYELSKVILQADPPLPHALWESAASVLSSILQYSSEYFLEVPVAVLVQLLRSGTESTVIGALNALLILESDDSTSAEAMVESGAVEALLDLLKSHQCEETAARLLETLLNNMKIRETKVAKSSISPISMYLLDPQTQSQQGRLLAALALGDLFQNEGLARTTDAGLACRALVNLLEEQPTEEMKVVAICALQNLVMYSRANKRAVAEAGGIQVILDLISSGHSDTSVQAAMFIKLLFSTHTVQEYASSESVRSITSAIEKDLWASGGVNEEYLKALNALLSNFPRLRGTEPTTLSIPHLVTSLKTGSEATQEAALESLFLLRQAWSACPVEVFKAQSVAASEAIPLLQYLIQSGPPRFQEKVELLLQCLPGTLTVTIKRGTNLRQSVGNPSVYCKLTLGSSPPRQTKIVSTGPTPEWDEAFAWAFDSPPKGQKLHISCKNKSKIGKSSFGKVTIQIDRVVMLGSVAGEYTLLPVSKSGPPRNLEIEFQWSNK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	46.460
SRP064423	SRR2545915	Juvenile tuber	64.760
SRP108465	SRR5643513	five period of Gastrodia elata	32.080
	SRR5643514	five period of Gastrodia elata	38.110
	SRR5643515	five period of Gastrodia elata	37.890
	SRR5643524	five period of Gastrodia elata	38.040
	SRR5643525	five period of Gastrodia elata	39.910
	SRR5643528	five period of Gastrodia elata	41.870
	SRR5643658	five period of Gastrodia elata	51.730
	SRR5643659	five period of Gastrodia elata	49.070
	SRR5643660	five period of Gastrodia elata	49.550
	SRR5643661	five period of Gastrodia elata	44.220
	SRR5643662	five period of Gastrodia elata	47.160
	SRR5643663	five period of Gastrodia elata	49.370
	SRR5643664	five period of Gastrodia elata	49.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	30.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.410
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.060
SRP279888	Gastro	Gastrodia elata tuber	56.01
	Juven	Juvenile tuber	61.18
	Mother_Gastro	Mother tuber of Gastrodia elata	36.77
	Mother_Juven	Mother tuber of Juvenile	56.67