Detail information of GWHGAAEX006007/evm.TU.scaffold_176.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743869972|ref|XP_010905935.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g22070 [Elaeis guineensis] |
| Swissprot | tr|Q9SHZ8|PP168_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g22070 |
| trEMBL | tr|K4AJP4|K4AJP4_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si039115m} |
| trEMBL | tr|K4AJP4|K4AJP4_SETIT | 2.00E-59 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si039115m} |
| TAIR | AT2G22070 | 0 | pentatricopeptide (PPR) repeat-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000183 | 423711 | 426531 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006007
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 7 | 34 | 3.50E-06 |
| PF01535.19 | PPR | 38 | 66 | 8.10E-06 |
| PF13812.5 | PPR_3 | 140 | 171 | 0.00017 |
| PF13041.5 | PPR_2 | 172 | 220 | 3.80E-08 |
| PF01535.19 | PPR | 249 | 272 | 0.0033 |
| PF13041.5 | PPR_2 | 278 | 322 | 1.00E-09 |
| PF01535.19 | PPR | 350 | 375 | 0.0017 |
| PF01535.19 | PPR | 416 | 445 | 0.00041 |
| PF14432.5 | DYW_deaminase | 449 | 573 | 4.60E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.300 |
| SRR2545915 | Juvenile tuber | 0.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.450 |
| SRR5643514 | five period of Gastrodia elata | 1.350 | |
| SRR5643515 | five period of Gastrodia elata | 1.090 | |
| SRR5643524 | five period of Gastrodia elata | 1.020 | |
| SRR5643525 | five period of Gastrodia elata | 2.100 | |
| SRR5643528 | five period of Gastrodia elata | 1.010 | |
| SRR5643658 | five period of Gastrodia elata | 1.670 | |
| SRR5643659 | five period of Gastrodia elata | 1.330 | |
| SRR5643660 | five period of Gastrodia elata | 1.620 | |
| SRR5643661 | five period of Gastrodia elata | 1.700 | |
| SRR5643662 | five period of Gastrodia elata | 1.780 | |
| SRR5643663 | five period of Gastrodia elata | 1.830 | |
| SRR5643664 | five period of Gastrodia elata | 1.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.240 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.760 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.87 |
| Juven | Juvenile tuber | 1.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.02 | |
| Mother_Juven | Mother tuber of Juvenile | 0.97 |