Gene detail

Detail information of GWHGAAEX006009/evm.TU.scaffold_176.11

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|470181905\|ref\|YP_007567780.1\|	3.00E-32	RalF protein, translocated into host cells by the Dot/Icm system [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
KOG	KOG0929	0	Guanine nucleotide exchange factor
nr	gi\|743878839\|ref\|XP_010908280.1\|	0	PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Elaeis guineensis]
Swissprot	tr\|Q9LZX8\|BIG2_ARATH	0	Brefeldin A-inhibited guanine nucleotide-exchange protein 2
trEMBL	tr\|A0A067JY10\|A0A067JY10_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP28742.1}
TAIR	AT3G60860	0	SEC7-like guanine nucleotide exchange family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000183	428819	475346	-

Transcript Sequence
>GWHTAAEX006009 CTTATTATGAATGGGCATCAATTTTATCCGTGTTCTAATGTTCTGTGTTTTCCACGTCCTGTGCATCCATTTTTCCCGCACCGATCTGCCCTCTTTAGATGTTCTCCACTTCCAAAATCTAGATCCAACAGAAAAGATCCACTTCTTCGCTTCCTCATCCTCCGCCTAGCGTCTGGCAGCGGGAATGGCTTCTCCAACAATAGAAGCTGATTCCCGGCTAAGCCAGATCATCGTCCCCGCCCTCGAGAAGATAATCAAGAACGCCGCATCATGGCGCAAAGGCCAATCCAAGCTATCTCACCAGTGCAAATCCCTCATCGAACGCATCTCCTCCCCCCCCCTTCCTCCTTCTCCATCTTCTCCAGCCTCCTCCGATTCCATCCCCGGACCGCTACTTGACTTCTCCCTTGCTGAATCTGAGCTCTTCATTTCTCCCCTCATATCTGCGTGCTCCTCCGGGTCGCTAAAACTCGCCGAGCCAGCCCTAGATTGCACGCACAAGCTTATTTCTCATTCATACCTTCACGGAGAGGCCGACTCCTCTGCTGCTCCTGACGCCCAACTCCTTGCCCAACTCATTGACGCCGCCTGCTCCTGCCAGTCCCACGCCGACGAATCCCTCGAGCTTCTCGTCCTCAAAACACTTCTCTCAGCTGTCACTTCCACTTCAATCCGCATCCATGGGGACTCGCTTCTCCGTGTCGTCCGCACTTGCTACGACCTCTACTTGCATAGCCGCAACACCGTCAACCAGTCCACTGCCAAAGCCTCCCTTATTCAGATGCTTGTCATCATTTTCCGTCGCATGGAGGCCGACTCATCCACCGTCCCCATACAACCTATAGTCGTCGCAGACCTCATGGCAGATCCCACTTCCGACATATCGCCGGCTACATCTTCCGAATTCAGCTTTGTTCAGAGCTTTATCACCAAGATTATCAGCGACATTGATGTTGTTCTTAACCCTCCTTCTTCCTCTGTTGCTACCGCTAGGTATAATGGCGCGTTTGAGTCCACTGCAGTTGAGAACACCAACCCTGCAGACTTGCTAGAATCGAATGATAAGGAGCTCCTGGATGCCAAGTACTGGGAGATTAGCCTGTACAAAACTGCTCTGGAAGGAAGGAAGGATGAGCTTGGTGCCGACGGGACGGTTGATAGAGAGGAGGATTTGGATGTTCATATTGGAAACAAGCTGCGGCGAGATGCTTTCCTCGTGTTTCGGGCACTCTGTAAGCTCTCCATGAAGACTCCTTCAAAAGAGGCGCTGGGTGATCCGACCCTAACGAGGGGTAAGATACTGGCTTTGGAGCTTCTCAAGATCTTGCTGGAAAATGCTGGGTCTGTTTTCAGGACAAGTGATAGGTTTTTGGGGGCGATTAAGCAGTATCTATGCCTATCTTTATTGAAGAACAGTGCCTCAACTCTAATGATTGTTTACCAACTTTTTTGCTCCATTTTTATGAGCTTGGTATCAAGATTTCGACCAGGATTGAAGGCAGAAATTGGAGTCTTCTTTCCTATGATTGTTCTCCGAGTTCTTGAAAATGTATCTCAACCGAACCTTCAACAGAAGATGACTGTTCTTCGTTTTTTGGAAAAATTATGTGTAGATTCCCAGATCTTGGTGGATGTATTTGTTAATTATGATTGTGATGTGCACTCACCAAATATATTTGAGAGGATGGTTAATGGCTTATTAAAGACTGCTCAAGGTCCACCTCCAGGCTTACCCACTACTTTGGTTCCACCTCAGGATGTCTACATGAAAAATGAGGCAATGAAGTGTTTAGTTGCAGTTTTGAACTCAATGGGAAGCTGGATGAATAAACAGTTGAAAATACCTGATCCTCATCTGGAAAATGCTGAGTGCAATTCTGAATGTGGAAACGAGCTTCATTTGGAAGATGGACGAGGGGAAGTCTCCCCTGGGGGTTCAGATTCCCATGTTGAAACAGCAAACGGTCCACCGGAAGCTACGTCCTTGGAGAAGCGAAGGGCATACAAACTTGAGCTTCAGGAAGGTATATCAATTTTTAACCAGAAACCTATGAAAGGCATCAATTTTCTTATTAATGCAAAGAAGGTGGGTGACTCGCCAGAGGAAATAGCTGTTTTTCTTAAAAGCACACCTGGTTTGAGCAAGGCTTTAGTTGGTGACTACTTGGGAGAGAGAGAAGGATTACCTTTAAAAGTTATGCACGCATTTGTGGACTCGTTTGATTTTCAAGGAATGGAATTTGATGAAGCAATAAGATCCTTCCTACAAGGCTTTAGGTTGCCTGGTGAGGCGCAAAAGATAGATAGAATCATGGAAAAATTTGCTCAGCGGTACTGCAAATGCAACCCAAATGTTTTTTCTAGTGCTGACACAGCTTACGTTCTTGCGTACTCTGTGATAATGCTCAATACTGATGCACATAACCCTACGGTTAAAAACAAGATGTCTCCTGAGGATTTTATAAGCAATAATAGGGGTATTGATGATGGCAAAGATCTTCCTGAAGAATACTTGAGAGCTTTATATGAACGGATTTCCAGGAACGAAATTAAGATGAAAGAAGATGAGCTGCTTCCTAATAAAAAACAATCTACAAATTCAAACAAAATACCAGGTTTGGACAGTATTTTGAATATTGTTATACGCAAGAGAGATGTACCTCTAGAGACAAGTGATGATCTGATTAAGCACATGCAAGAACAATTTAAGGAAAAAGCTCGCAAAACTGAGTCAGTATACTATGCTGCCTCTGATGTGGTAATCTTGAGATTCATGGTTGAGGTTTGCTGGGCACCAATGCTTGCAGCCTTCAGTGTTCCGCTTGATCAGAGTGATGATGAAGCAATAACATCCCTTTGTCTGGAAGGACTCCGTAATGCAATCCATATCACTTCAGTTATGTCGTTGAAAACACAAAGAGATGCTTTTGTCACATCATTAGCAAAGTTCACTTCTCTCCACTCAGCTGCTGACATTAAACAAAAAAATATAGATGCAATCAAGGTCATTTTCTTGGTTGCGGACGAAGATGGAAATTATTTGCAAGAGGCATGGGAACATATTTTGACATGTGTTTCACGATTTGAACATTTGCATCTTTTGGGAGAAGGTGCTCCTCCAGACGCTACATTTTTTGCAACCCCACAAGCTGAACTAGATATGTCTAAACAGGCTAAGTCATCATTCCTCCCCGTGCTGGTGAAAAAGGTCCCTTCACAAAACCCTCACGCAGTTGGATCTGCTAGAAGAGGCTCCTATGAAAGTGTTGGCGTAGGCGGTCATGCTTCTGGCTTGGTTACAACAGAGCAACTGAACAACTTGGTTTCGAACTTAAACATGTTGGAGCAAGTTGGAATATCTGAAGTGAACAATATATTCATTCAAAGTGAGAAACTGAATAGTGAGGCTATAGTTCATTTTGTGAAGGCCCTCTGCAAGGTTTCAATGGAGGAATTGCGATCTACATCCGATCCACGTATATTCAGTCTGACAAAAATTGTAGAGATTGCGCATTACAACATGAAACGTATTAGACTTGTATGGTCTAGCGTTTGGAATGTGCTATCAAACTTCTTTGTCACAGTTGGCTGCTCTGAAAACTTATCAATTGCTATCTTTGCAATGGATTCCTTGCGTCAGCTTGCAAAAAAATTTATTGAGCGGGAAGAACTGGCAAACTATAACTTTCAGAATGAGTTCTTAAAGCCTTTTGTCATTGTTATGCGTAAGAGTAGAGCCGTTGAAATTAGGGAGGTCATTATCAGATGCGTTTCCCAGATGGTGTTGGCTTGTGCTGGTAGTGTCAAATCTGGATGGAAGAGCATGTTCATGATATTCACGACTGCATCTTATGATGATCACAAAAATATTGTTGTTCTTGCCTTTGAAATCATCGAAAAGATCTTACGAGAGTACTTCCCTTACATTACTGAAACCGAAACCACCACGTTTACAGACTGTGTTAATTGCCTCATTGCATTTACTAATAGTAGGTTTAACAAGGACATCAGCCTCAAGGCAATTGGATTCCTCCGGTTCTGTGCTACGAAGCTTGCTGAAGGTGAACTCGGCTCCTATTTTAGGGACGACAAGTTGGCACCCGGAGCTAATGGATTGCTTTTGCCTAATAAGGTAAAGAATGCAAAGGAGAATCAGTTTATTGACAAAGATGATCATCTACATCTCTGGTTCCCATTGTTAGCAGGTTTGTCTGAGCTTAGCTTTGATCTAAGACCTCAAATCAGGAAAAATGCCTTGGAAGTCCTCTTTGAGACATTGCGCAATCACGGTCATCACTTCACATTACCTTTATGGGAGAAGGTGTTTGATTCGGCTCTATTTCCGATATTTGACTATGTAAGACATGCTATTGATCCTTCGGGAATTAACCCTCAAAGTCAGGGGTCTGGAGTTGATGCACCTGAACTCGATCAAGATATATGGCTCTATGAGACATGCACTCTTGCCCTTCAGCTAGTTGTTGATCTGTTTTTGAAATTTTATGATACTGTACATACGCTGCTAAACAAAGTTCTCATGCTGCTGACAAGTTTCATTAAGCGGCCTCATCAAAGTCTTGCCAGTTTCGGAATTGCTTCATTTGTTCGGTTGATGAATAATGCCGGATCCTTCTTTACAGAGGAAAAATGGCTGCTAGTAGTTTTGTCACTGAAAGAAACTGTCTATTCAACTCTTCCAGATTTTTCAGTTGTTTCATCTGAACCATATCTTGAGTATGAGCCAAAGGATGACGCACATTCTTCTTTAAGCCAAATTAACGATAATTCTGAGGATTCTGGAAATGAAAATTTGGAATGGTTGAGAACAAAAAGGATGCAAGCTGCTGTTGCTGATGCCAAGTGCCGGGCTTCCATTCAGCTATTATTAATTCAGGCTGTGATGGAGATATGCAGCATGTTCCGAGGCCAGCTGCCCGTTAAGACGAGCATCACGCTGTTCGAAGCCTCACACGCCATAGCATCGCATGCTCACAAGATAAACAGCAACAGCGAGCTTAGGTCGAGGCTTCAGGACCTCAGCTTTTCGACCCAATTACAGGACCCGCCGCTGCTCCGGCTGGAGAATGAGTCGTACCAGATAAGCCTCGCCCTCCTGCAGAGCATCTTGCCGGATGAAAATGACGGCGGCCCAGAGGTGGAGGCTCGCCTCATGAGTCTCTGCCGGGAAATCCTCCGGGCATACCTCAATGCCGCCAAGCCATGGAGTTCGCAGTCCGATAATCAGCGTTGGCTCGTCCCGCTCGGGTCCGGGAAACGGCGGGAGCTCGCCGCAAGGGCGACTGTCGTCGTGGAGACCCTTCAGGCCATCTGCGGATTGACGGACTCCACGTTCGAGCGAAACCTGCCTATGTTATTTCCCCTCCTCACTGACCTCATACGTTGCGAGCATGGGACCAACGAGGTGCAGGCGGCGCTTAGCGACATGCTCGCCTCCTGCGTCGGCCCCATCCTGCTGCAGCAGCCTGCCTGAGACGCCCGACTTCTTCCATCCTGTGATCAGATTTGCTGCGCTTTACCTGAGAGATATTGTATTCTTGCTCTTCTTTGTAGTGGCAAGTATCTGATTAGGAGTTTGCGTTTCAACAGGTATGTGTATATTATTAAGCCGTCGGTTAGCTGTTGATGTCTAGCATTTATATATTGTTTGTAAGGCCGAATGATGTCGTATGTTTGTTTGTTCAGTGAGTTTGTGCTCATTATGTTCTGGAGTATTTTGAAAGCCTATCTGTTCTTCTTAACTAGATTGCTGTGCTTGTATTTGTTGCCTTTTTCTGCTATTTTCTACAAAAAAAATTATTTTAAAGACTTTGCTACACTTTCACATTTATATACACATTAAAATATGATAATAACGTGGTAATTCTGTG

Network for GWHGAAEX006009

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16213.4	DCB	8	211	5.20E-35
PF12783.6	Sec7_N	339	497	6.40E-44
PF01369.19	Sec7	608	789	3.70E-68
PF09324.9	DUF1981	1156	1238	7.30E-30
PF16206.4	Mon2_C	1314	1395	4.20E-09

Protein Sequence

>GWHPAAEX006009
MASPTIEADSRLSQIIVPALEKIIKNAASWRKGQSKLSHQCKSLIERISSPPLPPSPSSPASSDSIPGPLLDFSLAESELFISPLISACSSGSLKLAEPALDCTHKLISHSYLHGEADSSAAPDAQLLAQLIDAACSCQSHADESLELLVLKTLLSAVTSTSIRIHGDSLLRVVRTCYDLYLHSRNTVNQSTAKASLIQMLVIIFRRMEADSSTVPIQPIVVADLMADPTSDISPATSSEFSFVQSFITKIISDIDVVLNPPSSSVATARYNGAFESTAVENTNPADLLESNDKELLDAKYWEISLYKTALEGRKDELGADGTVDREEDLDVHIGNKLRRDAFLVFRALCKLSMKTPSKEALGDPTLTRGKILALELLKILLENAGSVFRTSDRFLGAIKQYLCLSLLKNSASTLMIVYQLFCSIFMSLVSRFRPGLKAEIGVFFPMIVLRVLENVSQPNLQQKMTVLRFLEKLCVDSQILVDVFVNYDCDVHSPNIFERMVNGLLKTAQGPPPGLPTTLVPPQDVYMKNEAMKCLVAVLNSMGSWMNKQLKIPDPHLENAECNSECGNELHLEDGRGEVSPGGSDSHVETANGPPEATSLEKRRAYKLELQEGISIFNQKPMKGINFLINAKKVGDSPEEIAVFLKSTPGLSKALVGDYLGEREGLPLKVMHAFVDSFDFQGMEFDEAIRSFLQGFRLPGEAQKIDRIMEKFAQRYCKCNPNVFSSADTAYVLAYSVIMLNTDAHNPTVKNKMSPEDFISNNRGIDDGKDLPEEYLRALYERISRNEIKMKEDELLPNKKQSTNSNKIPGLDSILNIVIRKRDVPLETSDDLIKHMQEQFKEKARKTESVYYAASDVVILRFMVEVCWAPMLAAFSVPLDQSDDEAITSLCLEGLRNAIHITSVMSLKTQRDAFVTSLAKFTSLHSAADIKQKNIDAIKVIFLVADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFATPQAELDMSKQAKSSFLPVLVKKVPSQNPHAVGSARRGSYESVGVGGHASGLVTTEQLNNLVSNLNMLEQVGISEVNNIFIQSEKLNSEAIVHFVKALCKVSMEELRSTSDPRIFSLTKIVEIAHYNMKRIRLVWSSVWNVLSNFFVTVGCSENLSIAIFAMDSLRQLAKKFIEREELANYNFQNEFLKPFVIVMRKSRAVEIREVIIRCVSQMVLACAGSVKSGWKSMFMIFTTASYDDHKNIVVLAFEIIEKILREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLKAIGFLRFCATKLAEGELGSYFRDDKLAPGANGLLLPNKVKNAKENQFIDKDDHLHLWFPLLAGLSELSFDLRPQIRKNALEVLFETLRNHGHHFTLPLWEKVFDSALFPIFDYVRHAIDPSGINPQSQGSGVDAPELDQDIWLYETCTLALQLVVDLFLKFYDTVHTLLNKVLMLLTSFIKRPHQSLASFGIASFVRLMNNAGSFFTEEKWLLVVLSLKETVYSTLPDFSVVSSEPYLEYEPKDDAHSSLSQINDNSEDSGNENLEWLRTKRMQAAVADAKCRASIQLLLIQAVMEICSMFRGQLPVKTSITLFEASHAIASHAHKINSNSELRSRLQDLSFSTQLQDPPLLRLENESYQISLALLQSILPDENDGGPEVEARLMSLCREILRAYLNAAKPWSSQSDNQRWLVPLGSGKRRELAARATVVVETLQAICGLTDSTFERNLPMLFPLLTDLIRCEHGTNEVQAALSDMLASCVGPILLQQPA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18442	ARFGEF, BIG	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032012	Biological Process	regulation of ARF protein signal transduction
GO:0005086	Molecular Function	ARF guanyl-nucleotide exchange factor activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.500
SRP064423	SRR2545915	Juvenile tuber	51.760
SRP108465	SRR5643513	five period of Gastrodia elata	36.110
	SRR5643514	five period of Gastrodia elata	33.590
	SRR5643515	five period of Gastrodia elata	34.170
	SRR5643524	five period of Gastrodia elata	32.210
	SRR5643525	five period of Gastrodia elata	34.900
	SRR5643528	five period of Gastrodia elata	31.960
	SRR5643658	five period of Gastrodia elata	41.960
	SRR5643659	five period of Gastrodia elata	38.570
	SRR5643660	five period of Gastrodia elata	42.410
	SRR5643661	five period of Gastrodia elata	37.210
	SRR5643662	five period of Gastrodia elata	37.690
	SRR5643663	five period of Gastrodia elata	40.900
	SRR5643664	five period of Gastrodia elata	41.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	40.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	34.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.380
SRP279888	Gastro	Gastrodia elata tuber	39.07
	Juven	Juvenile tuber	60.05
	Mother_Gastro	Mother tuber of Gastrodia elata	34.59
	Mother_Juven	Mother tuber of Juvenile	46.45