Detail information of GWHGAAEX006010/evm.TU.scaffold_176.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|407462558|ref|YP_006773875.1| | 5.00E-13 | RNA polymerase Rpb6 [Candidatus Nitrosopumilus koreensis AR1] |
| KOG | KOG3405 | 7.00E-66 | RNA polymerase subunit K |
| nr | gi|697096546|ref|XP_009616945.1| | 6.79E-75 | PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A-like isoform X1 [Nicotiana tomentosiformis] |
| Swissprot | tr|Q9FJ98|RPD6A_ARATH | 2.00E-66 | DNA-directed RNA polymerases II, IV and V subunit 6A |
| trEMBL | tr|B9ID35|B9ID35_POPTR | 4.00E-75 | DNA-directed RNA polymerase II family protein {ECO:0000313|EMBL:EEF06577.1} |
| TAIR | AT5G51940 | 7.00E-66 | RNA polymerase Rpb6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000183 | 477467 | 492121 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006010
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01192.21 | RNA_pol_Rpb6 | 59 | 110 | 6.60E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03014 | RPB6, POLR2F | RNA polymerase | map03020 |
| Cytosolic DNA-sensing pathway | map04623 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity |
| GO:0005665 | Cellular Component | DNA-directed RNA polymerase II, core complex |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 117.480 |
| SRR2545915 | Juvenile tuber | 136.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 142.470 |
| SRR5643514 | five period of Gastrodia elata | 170.460 | |
| SRR5643515 | five period of Gastrodia elata | 149.610 | |
| SRR5643524 | five period of Gastrodia elata | 161.880 | |
| SRR5643525 | five period of Gastrodia elata | 96.480 | |
| SRR5643528 | five period of Gastrodia elata | 85.110 | |
| SRR5643658 | five period of Gastrodia elata | 76.710 | |
| SRR5643659 | five period of Gastrodia elata | 180.590 | |
| SRR5643660 | five period of Gastrodia elata | 188.820 | |
| SRR5643661 | five period of Gastrodia elata | 188.510 | |
| SRR5643662 | five period of Gastrodia elata | 175.510 | |
| SRR5643663 | five period of Gastrodia elata | 185.630 | |
| SRR5643664 | five period of Gastrodia elata | 160.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 110.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 68.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 122.030 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 113.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 100.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 97.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 103.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 98.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 127.900 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 124.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 134.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 134.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 155.11 |
| Juven | Juvenile tuber | 121.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 77.09 | |
| Mother_Juven | Mother tuber of Juvenile | 77.14 |