Gene detail

Detail information of GWHGAAEX006011/evm.TU.scaffold_176.13

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262196624\|ref\|YP_003267833.1\|	9.00E-11	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOG	KOG0118	3.00E-77	FOG: RRM domain
nr	gi\|695069113\|ref\|XP_009381524.1\|	2.87E-141	PREDICTED: UBP1-associated protein 2B-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|O80678\|UBA2B_ARATH	8.00E-78	UBP1-associated protein 2B
trEMBL	tr\|M0U8Z2\|M0U8Z2_MUSAM	1.00E-105	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP13830_001}
TAIR	AT2G41060	3.00E-77	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000183	493350	495512	+

Transcript Sequence
>GWHTAAEX006011 ATCATTTCTTAAATGCATACATCTATCTTTTATAAATGCAAGCATTAAGGTTTTATGATGAATGATCACAAACTCATATTAAGGTTTTATTTACTGTATTTGAAGGAACAACTTCTAATTTTACGTAGGACTTGTTTCCTGGATCGCACTACTTATTTAGTGAACCGCAAAACCCTAACTCCGAAAGGTCCAAAACCCTCGGTTACTCTCCACCCCCTCCTTACTGTCCCCGCTGCTTCTTAATGTCTTCCGCCAAGAAGAGGAAGACTGACCAGGACGCTGAACAGAAGATATCCATTCCCAACCACAGCGCCGATGCCAAATCTCACCACCCCGCCGTCGCATACATCCGCCAGCCCGACGACGATCCCGGCTCTCCCGCCTCAGATTCCGATCCTGATTACGAAGAGGAGGCGGAAGAAGAAGACGTCCAAAATCTTTTAGCACCCCTCGACACCAACCAGCTAGCTTCACTACTTGTCTCTGCCGCTGCTCGAGACCCCACCACTCTCTCCGAGATCCGAGCCTTAACTGATCTCGATCCAGCTCATCGAAAGCTTTTCATCCACAGCCTTGGCTGGGAAACCACCTCCGACAGCCTCCGAGCTGCTTTTTCCCGCTACGGCGTTATCGAAGAGTGTCGCGTTGTATCAGAGCGTGCTACGGGCCGCTCCAAAGGGTACGGTTTCGTTCTCTTCCGAGAACGCTCGTCCGCCCGTCGCGCCCTCAGCCAGCCCCACAAGCTCATCGATAACCGCATGACCACATGTCAGCTTGCTTCAGTTGGCCCTTCTCAGAACGTTAATCGCAGCCTAAAGAGCGAGCAGAGCCCCATTCCCAGCGCTGGCGATAATCTTCCCCGGAAGATCTATGTCGGAAATCTTCATGGAGACATTGATGGCCACCGCCTCCATTCATTCTTCTCTCAGTATGGGGAGATTGAGGAAGGTCCGATTGGATTCGATCGCCATACTGGCAAGTGCAAGGGTTTTGCACTTTTTGTGTTCAAGACTGTTGAGGGAGCTAGAAAGGCATTAGAAGAGCCTATTAAAAACTTTGAAGGGCATAATCTCGTTTGCCAAAAGGCCACTGATAGTAATAAGGGTAGGATATCTGCAACTGCCAACAGTGCAAGTGGTAACAATGATACCACGGCTAATGCTGTGGCGAACTTGGGCAGTTTTAACCCGTCTGCTTATAGTGGTCAGTTTACCCCTACAGACTTGGGGCTGGCACAGCAGGCGGCAGTTTTTGGGCAAGGGCTTATTGGGCAGGGAATGCCAATGAATGCAGCTGTACTTGCAATGCTGGCAGCTGCTGGCCAAAGCTCAGCCCCTTTTGGTCTCAATCCTGCCATGCTTGCTTCCTTGAACCCTGCTATTTTGGGAGCATTGGGTACAGGAGTTTCCTCATCTGCACTCCCACAGGCAGCAATTGGACAGCAGCAGGGGGTTGTGCCAAATTATGCATTAGGGAGTTCTGGATATCAAAATATAGGGTTTCAGGGTCCTCCTGGTTTCCAGGGACCTCCAGGATTTTCAAGTGCCCCTGGTTTTCAAGGGACTCCACCACCAGGGACACAACAGATTGGTGGTAGCAGTGCTTCATCCTATCAAAGTGGCACTTTGGCGCAGAGCGGAATTCAGCGGCCTACGTTGGGATCTATGAGTGGCTATGGACCTCGTTAGTTCAATGTCAAGAACGTGATTACTCGCTTCGTTTGCAATTGGATGGATTTGAATCTGTATTGACGTCGAGCTTGTTGCGCAACTGTTATTCTGAAGGAATGCCTTTTGATTTGGTTTTGGCATAACTGTTTTAGGTTGTCTGGTTTTTCTGTTTTATCTGTTATTTAGTCTTTATTTTTTGAGATGTGTACTAAATTATTATTAAAACATCTTGGCCTTGATGTGGCTTTTACGAAACAGTTCTACGTGGTTTGTGACAATTGTCCTTATTCGATATTTCCGCACTTTTCTTTTAAGCAATTTATAAACAGTTCTACTTGGTTTGTTCTTTCAGCATTTTTTTGTTGTTAACG

Network for GWHGAAEX006011

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	106	169	7.80E-15
PF00076.21	RRM_1	209	276	1.40E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.460
SRP064423	SRR2545915	Juvenile tuber	30.220
SRP108465	SRR5643513	five period of Gastrodia elata	37.080
	SRR5643514	five period of Gastrodia elata	33.350
	SRR5643515	five period of Gastrodia elata	32.630
	SRR5643524	five period of Gastrodia elata	33.130
	SRR5643525	five period of Gastrodia elata	21.920
	SRR5643528	five period of Gastrodia elata	19.330
	SRR5643658	five period of Gastrodia elata	18.030
	SRR5643659	five period of Gastrodia elata	49.220
	SRR5643660	five period of Gastrodia elata	48.820
	SRR5643661	five period of Gastrodia elata	52.030
	SRR5643662	five period of Gastrodia elata	45.230
	SRR5643663	five period of Gastrodia elata	37.800
	SRR5643664	five period of Gastrodia elata	41.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.870
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	58.740
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	50.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	44.490
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	58.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	49.500
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.200
SRP279888	Gastro	Gastrodia elata tuber	44.79
	Juven	Juvenile tuber	69.81
	Mother_Gastro	Mother tuber of Gastrodia elata	19.28
	Mother_Juven	Mother tuber of Juvenile	34.27