Gene detail

Detail information of GWHGAAEX006013/evm.TU.scaffold_176.16

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|257094183\|ref\|YP_003167824.1\|	2.00E-19	WD-40 repeat-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1]
KOG	KOG0647	0	mRNA export protein (contains WD40 repeats)
nr	gi\|672162417\|ref\|XP_008801025.1\|	0	PREDICTED: rae1-like protein At1g80670 [Phoenix dactylifera]
Swissprot	tr\|Q38942\|RAE1_ARATH	0	Protein RAE1 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|K3Z7P4\|K3Z7P4_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si022564m}
TAIR	AT1G80670	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000183	619517	680560	+

Transcript Sequence
>GWHTAAEX006013 TCTCCCGAAGCTCGCCTCCGCCAGGCGCAGTCCCGACGCCTCGCCGGACTCGCTCGCCTCGCTGACACTTTCGCCCGACGCAACTCTCCAGACGTAGAGCATTTATTAGGGTTGATTTCCAACAAACTTCTGGTAGAAGTGGGTGTTAGCTTGAGAACAATATGGCCAGCCTTTCTGGGCTTGGCAGTTCATCAGCTGCTAATCCGAATCCAAACAAATCATTTGAGGTGCTTCCTTCCCCTAGTGATTCAGTTTCTAGCCTCAGTTTTAGTCCTAAAGGAAATTATATGGTGGCTACTTCTTGGGATAATCAGGTTCGGTGCTGGGAAATTCTCCCTGGAAGCAGCCAACCAAAGGCATCGATATCTCACGACCACCCGGTTTTATGCTCAACTTGGAAGGATGATGGAACAACCGTATTTTCAGGTGGCTGTGATAAACTAGTCAAAATGTGGCCGTTAATGTCTGGTGGCCAACCAACTCAAGTTGCTGCTCATGACGCACCTATCAAAGAGATTGCTTGGATTGAACAGTTAAAGTGTCTTGTGACTGGGAGTTTTGACAAGACCCTGAGGTATTGGGATACTAGGCAAGCACAGCCTGTTCACACTCAACAACTTCCTGAAAAATGCTATGCTCTAACAGTGCGATATCCTTTGATGGTTGTTGGCACTGCTGACAGAAATCTCATAGTTTTTAATTTGCAAAACCCTCAGACAGAGTTTAAGAGAATTGCATCTCCTCTCAAGTACCAAACTAGATGTGTTGCTGCATTTCCTGATCAACAAGGGTTCTTGGTTGGGTCGATAGAGGGAAGGGTTGGAGTTCACCATCTTGATGAAGCTCAACAAAGCAAAAACTTTACATTTAAGTGCCACAGAGAGAACAATGACATTTATGCTGTAAATTCATTAAATTTTCATCCAGTACATCATACATTTGCTACAGCAGGGTCTGACGGAACTTTCAACTTTTGGGATAAAGATAGCAAACAACGACTGAAAGCCATGACTAGATGCCCTCTTCCTATTCCCTGCAGTACGTTTAACCAGGATGGGTCAATATTTGCATATGCGGTCTGCTACGACTGGAGTAAGGGTGTGGAAAATCATAACCCAGCGACGGCGAAAACATACATCTATCTCCACTCTCCGCAGGAAACTGAGGTGAAGGGAAAGCCGCGCATTGGTGCGGGCGGCCGCAAATGATTGTCCAACTGAATTTCAACTTATAATTTTTTGTTCTTATAATAAAAATCTAAGTATTCTCTTTGAAATATTAATGTTTTGATTTAATTTTATCAATACTGTTTTTATCTTAACTTGTGTAAATAATTGGAACTATTAAGTTGCTATAAGATTATTAGGAGGCATTAACGTATGTGATTGATAGGATTTAATCTTTATATCTGAGCATAAATCAAATGCCCTAATTTTATTTAATCAAAGGATTTATTTCACTCGATGTATTAAAAATTG

Network for GWHGAAEX006013

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	29	55	0.00037
PF00400.31	WD40	70	98	0.16
PF00400.31	WD40	111	141	0.12
PF00400.31	WD40	234	273	0.0016

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14298	RAE1, GLE2	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	77.660
SRP064423	SRR2545915	Juvenile tuber	63.190
SRP108465	SRR5643513	five period of Gastrodia elata	35.690
	SRR5643514	five period of Gastrodia elata	34.500
	SRR5643515	five period of Gastrodia elata	32.700
	SRR5643524	five period of Gastrodia elata	32.540
	SRR5643525	five period of Gastrodia elata	39.150
	SRR5643528	five period of Gastrodia elata	40.300
	SRR5643658	five period of Gastrodia elata	42.130
	SRR5643659	five period of Gastrodia elata	37.030
	SRR5643660	five period of Gastrodia elata	41.170
	SRR5643661	five period of Gastrodia elata	38.730
	SRR5643662	five period of Gastrodia elata	40.100
	SRR5643663	five period of Gastrodia elata	37.820
	SRR5643664	five period of Gastrodia elata	41.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.360
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	40.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.720
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	39.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	41.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	41.250
SRP279888	Gastro	Gastrodia elata tuber	57.14
	Juven	Juvenile tuber	54.18
	Mother_Gastro	Mother tuber of Gastrodia elata	34.62
	Mother_Juven	Mother tuber of Juvenile	50.64