Detail information of GWHGAAEX006014/evm.TU.scaffold_176.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672173717|ref|XP_008806993.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g71490 [Phoenix dactylifera] |
| Swissprot | tr|Q9C9I6|PP116_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g71490 |
| trEMBL | tr|Q84Q17|Q84Q17_ORYSJ | 0 | Putative pentatricopeptide (PPR) repeat-containing protein {ECO:0000313|EMBL:BAC57760.1} |
| TAIR | AT1G71490 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000183 | 681437 | 683563 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006014
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 151 | 193 | 3.30E-08 |
| PF01535.19 | PPR | 222 | 248 | 0.00026 |
| PF01535.19 | PPR | 250 | 274 | 1.90E-07 |
| PF01535.19 | PPR | 285 | 311 | 0.00048 |
| PF01535.19 | PPR | 358 | 381 | 0.71 |
| PF13041.5 | PPR_2 | 383 | 430 | 1.70E-08 |
| PF01535.19 | PPR | 458 | 482 | 0.0021 |
| PF13041.5 | PPR_2 | 485 | 532 | 2.60E-07 |
| PF01535.19 | PPR | 559 | 582 | 0.0074 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.150 |
| SRR2545915 | Juvenile tuber | 2.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.870 |
| SRR5643514 | five period of Gastrodia elata | 6.910 | |
| SRR5643515 | five period of Gastrodia elata | 6.920 | |
| SRR5643524 | five period of Gastrodia elata | 5.800 | |
| SRR5643525 | five period of Gastrodia elata | 4.890 | |
| SRR5643528 | five period of Gastrodia elata | 4.260 | |
| SRR5643658 | five period of Gastrodia elata | 3.520 | |
| SRR5643659 | five period of Gastrodia elata | 9.360 | |
| SRR5643660 | five period of Gastrodia elata | 9.170 | |
| SRR5643661 | five period of Gastrodia elata | 9.580 | |
| SRR5643662 | five period of Gastrodia elata | 10.450 | |
| SRR5643663 | five period of Gastrodia elata | 8.800 | |
| SRR5643664 | five period of Gastrodia elata | 6.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.440 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.20 |
| Juven | Juvenile tuber | 5.97 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.96 | |
| Mother_Juven | Mother tuber of Juvenile | 3.18 |