Gene detail

Detail information of GWHGAAEX006018/evm.TU.scaffold_176.23

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|124027677\|ref\|YP_001012997.1\|	1.00E-53	ATPase [Hyperthermus butylicus DSM 5456]
KOG	KOG0737	0	AAA+-type ATPase
nr	gi\|743839640\|ref\|XP_010937056.1\|	0	PREDICTED: uncharacterized protein LOC105056535 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9SEX2\|KTNA1_ARATH	4.00E-60	Katanin p60 ATPase-containing subunit A1 {ECO:0000255\|HAMAP-Rule:MF_03023}
trEMBL	tr\|A0A068V890\|A0A068V890_COFCA	0	Coffea canephora
TAIR	AT1G50140	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000183	957801	1007909	+

Transcript Sequence
>GWHTAAEX006018 GAAGCATTGTTCACCACACTTTGTATGTAGAGTAAGCCGATGCTGTGTTGGAGGGCTAAACATGAGTATCACGAACCAATGTGTAGGACTCTTCTGTATGTGCAGATCTGAGCTCGTTGAGGCAAAGTGCAAACTCAACAGAGGCGGTTCGAATACATGTGTGCGCGCAATGAGTAGGGCTGTGCAGGGCTCAATCATAACTAAAGCTCAACTGAGTGAGGTTCATATATGGGGCGCCATAGTTGCTGAGTGAGGACGGTCTACATGGGAGCTGTGACTACATTCGTATTTTTCCTTGTTTTCAATTTGAAGTTTTGCAGGAAGCAAGTGTTCATGCCAATGCAATAAGGAATAGTGTGCAGATGGCCGCAATGTTTGCACGAAAGTTTAAAAGCAGAGGACAACGCTTGGACTTTCTACTAAGTCGAACAAATAATGCATATAGGTCAAGCCCTAGGATTATATATCAATTTCACTCCAGTGGGGATACGCGCACTAAAAAAATAACTCCTAGTCAGAGTGCTGCTAGACGATTTTACTCATCCGGAGCGTCTTTGCAGGCTATTCCTGTGAGATTTTATAGGAGATATGAGGCCCCTTTAGCATATAATTTATATAGATTTTATAGCTTGGGCGGTGATGGAAGCAATGCTAGTGAGGGAAAACATGCGCCTGTTAAGAATTCACTTAAACTCGATGAAGAGAAGTTTCGAAAGCGGGATGCTTTATCTGACGCCGAGTACTATAACTTACATGCACGACTTGGGGAGCATGAGCAACAGGAGTGGCTCGGCGTTGAGAAGTTATGTAGCAGCTGCAAGGAGAAGGAATCTCCCTTTTTGCCCAGACGGCAGCGGTTTAAGAATGAATTCTTGCGGAGAGTGGTTCCATGGGAGAAAATTACGATTTCGTTGAGAACATTTCCTTATTACATCAACGAACACGCAAAAAATCTGTTAGTGGAATGCGCTTCTTCTCATTTGAGACAGAAAAACTGGGTGTTAAGTTACGGTGAAAGGTTAACCTCTTCAAATGGGAGAATTTTACTTCAGAGCATGCCAGGGACTGAACTCTATCGGGAGAGATTGGCCAGGGCCCTTGCCAGGGACTTACAGGTTCCCTTGCTTGTGCTTGACAGCAGTGCTCTGGCTTCATTTGAGATTGATGTAGAATGTGCTTCAGAAAGTGATGCAGAGGATCTCCATGTTGAATCAGGTGAAGGGCGCATATCAGAATCAGAGGATGAAGTGGAGAATGAGGCTAGAAATGTGGAAGACTGGGGAAGCAGCAGTGAAGTAAAATCAGGTGAAAGTGATGATGATGATGATGATGGTAGTGGTGGTGTTGATGAGCAAGTAGCTGCAGAGGCGCTTAAAAAGCTTGAGGAATTTGCAAAGAATATAACTGGAGAAACAGGAAGTACATTGGTATCTACAGAATTAGATGCCTCTTCAGGAGAACTAAGACCTCTCAAAAAAGGTGATCTTGTGAAGTATGTTGGGCCTTCCATGCAATTTGGATCCACAAAAGAGTTCTACTTGGGGAAAACACATTCTTCCTATGGCCCACTTGATACCTGTACTTTTTTTAGTGGCAGGTCTCTGGTGAGTGGGCAGCGTGGGGAAGTGTATGAGATAAACGGGAATCATATAGCTGTAATTCTTGATAATGCGCCAAGTGAGAAAGATGGAGATTGCAATGAACAAGATGAGAAATTAGCTCTTTGTTGGTTTGATATTCAGGATATTGTGCATGATTTTGATGTCGAGGCTAAAGATTGGTATGTAGCTCTTGAGGCGCTTTGTGAGGTTTTGCTATCCTTGCAACCACTTATAGTCTATTTTCCGGATTCTCTTAAATGGTTGCAGAGAGCTGTTCCTAAGTCAAGCAGTAAGGAGTTTGTTCTTAAGTTGAAGCAAAAGTTTGAGCAGCTTTCTGGATCTGTTGTTTTGATATGCGGTCAGAACGTTTTAGAAACAGAATCTAAAGAGAAAGAAAAACCTGCAACGATTCTACCACAATTTCGCATTGCTAGTATGCCATTTTTTTTGAAACAGCTAATTGAAGGTTCAAGAGCTCCTAAACATTCAAAAGGTTGCTATACAAGTAATATTTTTAAAAATCCCATGGTTGTTCCTCCCCCGAAGGAAGAGGCGAAACTAAGAACTTTCCTCAAACAAATTGAAGAGGATAAAAGAATTACCATGTCAAGGAAAAACATTATTGAGCTCCACAAGGTTCTGGAAAGACATTGCCTTTCATGCTTGGAGCTTTTTCGTCTGAAGACGGATGGTGTTTTCTTGACAAAGCACAAAACAGAAAAAGTTATAGGATGGGCTAGAAATCACTACTTGTCCTCTGTGGATCTTCCTTCTGTTAGCAACGGTAGACTGTTGATTCCCTGGGAAAGCTTGGAGGTCTCTATTACAAGGTTAAGGGAGCAGGAAAGACTTTCGATGAAGCCCTCAGAGACCATAAAGAAGCTTGCAAAAAACGAGTATGAGAGCAATTTTGTTTCGGCAGTGGTGCCCTCAGATGAAATAGGAATTAGGTTTGATGATATCGGCGCCCTTGAAGATGTGAAGAACATTTTAAATGAACTTGTAACGCTTCCAATGAGAAGGCCAGAGATTTTTTCACATGGAAACCTTTTACGGCCTTGCAAAGGAATTTTGCTCTTTGGCCCACCAGGAACAGGCAAAACTCTTCTTGCCAAAGCTCTTGCAACTGAAGCTGGAGCAAATTTTATTAATGTAACTGGCTCCACTCTCACATCAAAGTGGTTTGGTGATGCTGAAAAGCTCACCAAGGCTCTTTTTTCTTTTGCGTCTCGGCTAGCACCTGTTATTATTTTTGTTGATGAGGTAGACAGCATACTTGGTGCCCGTGGTGGCGCATTTGAGCACGAAACAACAAGAAGAATGCGAAATGAATTTATGGCAGCATGGGATGGTTTGAGAACCAAGGAAAATCAAAGGATTCTGATCCTTGGCGCAACTAATCGTCCGTTTGATTTGGACGATGCTGTGATTCGTCGCCTTCCAAGAAGAATATATGTAGGCCTTCCGGATGCAGAAAACCGAATGAAGATTTTAAAAGTATTCCTTTCCTGCGAAAATCTTGACCCTAGCTTTAGATTTGACGAGCTGGCTAATGCGACAGAAGGTTATTCTGGAAGTGATTTGAAGAATCTTTGTATTGCTGCTGCATATAGACCTGTCCAGGAACTTCTCCAAAGAGAGGAGCTATGCAGACATAGTACATCACTCTCACTGAGGCAGCTTGTTCTTGATGATTTCATCCAAGCAAAATCTAAGGTGCTATAA

Network for GWHGAAEX006018

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	770	900	1.40E-35

Protein Sequence

>GWHPAAEX006018
MAAMFARKFKSRGQRLDFLLSRTNNAYRSSPRIIYQFHSSGDTRTKKITPSQSAARRFYSSGASLQAIPVRFYRRYEAPLAYNLYRFYSLGGDGSNASEGKHAPVKNSLKLDEEKFRKRDALSDAEYYNLHARLGEHEQQEWLGVEKLCSSCKEKESPFLPRRQRFKNEFLRRVVPWEKITISLRTFPYYINEHAKNLLVECASSHLRQKNWVLSYGERLTSSNGRILLQSMPGTELYRERLARALARDLQVPLLVLDSSALASFEIDVECASESDAEDLHVESGEGRISESEDEVENEARNVEDWGSSSEVKSGESDDDDDDGSGGVDEQVAAEALKKLEEFAKNITGETGSTLVSTELDASSGELRPLKKGDLVKYVGPSMQFGSTKEFYLGKTHSSYGPLDTCTFFSGRSLVSGQRGEVYEINGNHIAVILDNAPSEKDGDCNEQDEKLALCWFDIQDIVHDFDVEAKDWYVALEALCEVLLSLQPLIVYFPDSLKWLQRAVPKSSSKEFVLKLKQKFEQLSGSVVLICGQNVLETESKEKEKPATILPQFRIASMPFFLKQLIEGSRAPKHSKGCYTSNIFKNPMVVPPPKEEAKLRTFLKQIEEDKRITMSRKNIIELHKVLERHCLSCLELFRLKTDGVFLTKHKTEKVIGWARNHYLSSVDLPSVSNGRLLIPWESLEVSITRLREQERLSMKPSETIKKLAKNEYESNFVSAVVPSDEIGIRFDDIGALEDVKNILNELVTLPMRRPEIFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFINVTGSTLTSKWFGDAEKLTKALFSFASRLAPVIIFVDEVDSILGARGGAFEHETTRRMRNEFMAAWDGLRTKENQRILILGATNRPFDLDDAVIRRLPRRIYVGLPDAENRMKILKVFLSCENLDPSFRFDELANATEGYSGSDLKNLCIAAAYRPVQELLQREELCRHSTSLSLRQLVLDDFIQAKSKVL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.900
SRP064423	SRR2545915	Juvenile tuber	32.570
SRP108465	SRR5643513	five period of Gastrodia elata	22.560
	SRR5643514	five period of Gastrodia elata	24.810
	SRR5643515	five period of Gastrodia elata	23.710
	SRR5643524	five period of Gastrodia elata	24.520
	SRR5643525	five period of Gastrodia elata	17.490
	SRR5643528	five period of Gastrodia elata	12.870
	SRR5643658	five period of Gastrodia elata	18.650
	SRR5643659	five period of Gastrodia elata	27.120
	SRR5643660	five period of Gastrodia elata	25.050
	SRR5643661	five period of Gastrodia elata	23.610
	SRR5643662	five period of Gastrodia elata	20.840
	SRR5643663	five period of Gastrodia elata	26.050
	SRR5643664	five period of Gastrodia elata	23.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.790
SRP279888	Gastro	Gastrodia elata tuber	31.00
	Juven	Juvenile tuber	30.54
	Mother_Gastro	Mother tuber of Gastrodia elata	18.92
	Mother_Juven	Mother tuber of Juvenile	24.12