Gene detail

Detail information of GWHGAAEX006023/evm.TU.scaffold_176.31

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108762272\|ref\|YP_629357.1\|	2.00E-115	ABC transporter permease [Myxococcus xanthus DK 1622]
KOG	KOG0055	0	Multidrug/pheromone exporter, ABC superfamily
nr	gi\|743839698\|ref\|XP_010937072.1\|	0	PREDICTED: ABC transporter B family member 19 [Elaeis guineensis]
Swissprot	tr\|Q9LJX0\|AB19B_ARATH	0	ABC transporter B family member 19
trEMBL	tr\|M0ZLZ3\|M0ZLZ3_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400003590}
TAIR	AT3G28860	0	ATP binding cassette subfamily B19

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000183	1165212	1176118	-

Transcript Sequence
>GWHTAAEX006023 AAAATACCACACGAGAAAACACAAAATATAACTCGAAGTTTCTGCTCCGGTACACTAGCGCATTCTCACTTACGGTGATCGCATCAATAAGGAATTATATGAGGGTCGCGCCATCGCGAACTAGCTCTCAGGCTCTCCGACTGCAGTATTGCAGTATCTTCGTTTAATAAAGTAACCAGAGGAAGAAACCGACAAGCTTCTCTTGCTCGAAGCTCGCGGCCGTGCCTCAATGGCGGAAACCCTCCCAACCTGTGGTATTATCTACCTCTTTCCCGCTTAGACTCTGAATCGTAATCTTCTGGAGAATTGCAGCTGGTGCTCTCCCAAAGCTTGCTCTTCTTCGGCTTTATAAGACTGCAGAGTTCAACTGCGTTTTACTTAATCGGTGACAATGGCGGAAGTGACGGAGGGGAAGGTGGTGGTGGAGGCTGAGAAAAAGAAGAAAGAGCAGAGTCTGGCGTATTATGAGCTGTTTTCGTTTGCTGATCGGTTCGACGCACTGCTAATGGCTGCCGGCAGCATCGGTGCGGTGGTGCACGGCTCTGCCATGCCTGTATTCTTCCTCCTCTTTGGAGATCTAGTAAACGGATTTGGAAAGAATCAGACTAATCTAAGCAAAATGACTGACGAGGTCTCCAAGTACGCTCTCTACTTCGTTTATCTCGGGCTTGTTGTGTGCATTTCTTCATATGCAGAGATAGCGTGCTGGATGTATAGCGGTGAGAGGCAATCCGGCGCGTTGAGGAGGAAATACTTGGAGGCTGTGCTGAAGCAAGATGTAGGGTTTTTTGACACGGACGCTCGAACGGGAGACATCGTCTTCAGTGTCTCTACGGATACTCTGCTCGTTCAGGACGCCATAAGTGAGAAGGTTGGAAATTTTATTCATTATTTGTCGACCTTCCTTGCTGGCTTGGTGGTGGGATTCATATCGGCATGGAGGCTGGCTCTACTGAGCGTGGCGGTGATACCAGGGATTGCCTTTGCTGGGGGTCTTTATGCCTACACTTTGACTGGGCTTACATCAAAGAGCCGGGAAGCATACGCCAATGCGGGGATCATCGCAGAACAGGCTATTGCTCAAGTAAGGACCGTATACTCATTTGCTGGGGAGGGCAAGACACTTAATACTTACTCTGAAGCAATACAATATACACTTAAACTGGGCTATAAAGCAGGGATGGCAAAAGGCTTGGGGATTGGGTGCACGTACGGGATTGCATGCATGTCTTGGGCACTTGTGTTTTGGTATGCCGGTGTCTTCATCCGGAATGGGCAGACTGATGGAGGAAAGGCTTTTACGGCTATCTTTTCAGCCATTGTTGGTGGAATGAGCCTGGGCCAGTCATTTTCAAATCTTGGAGCATTTAGTAAAGGGAAGGCTGCTGGTTTCAAACTCTTGGGATTGATCCGGCAGAAGCCTTCCATCATTCAGGACCTTGCAGATGGGAAATGTTTGGATGAGGTTTATGGAAATATAGAATTTAAAGATGTCACATTTAGTTACCCATCACGCCCCGATGTTGTCATCTTCAGGGATTTCTCTCTTTTTTTCCCTGCGGGGAAGACCGTTGCTGTTGTTGGAGGTAGCGGATCTGGTAAGAGCACAGTTGTTGCTCTGATTGAAAGGTTCTATGATCCCAACCAAGGGCAAGTGTTGCTTGATAATGTGGACATAAGAACACTTCAGCTGAGATGGCTTAGAGATCAAATCGGTTTGGTAAACCAAGAACCGGCATTGTTTGCGACTACCATATTGGAAAACATACTCTACGGGAAATCTGATGCCACAATTGCTGAAGTTGAGGAAGCTGCAGCTGCAGCAAATGCTCATAGTTTCATCACATTGCTTCCCAACGGCTACAATACCCAGGTCGGAGAAAGGGGCGTTCAGCTCTCTGGTGGCCAGAAGCAGAGAATCGCGATAGCACGGGCTATGCTAAAAGATCCCAAGATTCTTCTTCTTGATGAAGCGACCAGCGCCCTTGATGCTGGATCAGAGAGCATCGTTCAAGAAGCACTGGACCGCCTTATGGTGGGGAGAACAACTGTGGTTGTTGCCCACAGGCTCTCAACCATAAGAAATGTTGACACTATTGCTGTCATCCAACAAGGGCAGGTTGTTGAAACCGGAACACACGAAGAACTTATAGCCAAGGGGAACACTGGAGGGTACTCGTCTTTAATTCGGTTTCAAGAGATGGCGAGGAGTCGAGACTTTGGCGCCCCATCTACTCGTAGATCGCGCTCATCGCGCCTGAGCCATTCTCTGTCAACTAAATCTCTCAGCCTGCGCTCTGGAAGCCTGAGGAATTTGAGCTATCAGTACAGCAGTGGGGCTGATGGCCGTATAGAGATGGTTTCCAATGCAGATAATGATCGAAAGTATCCCGCTCCTGATGGCTATTTCTTCAAGTTACTTAAATTAAATGCCCCTGAATGGCCTTATGCCGTCTTGGGAGCTGTTGGTTCTATCCTCTCTGGGTTCATCGGCCCGACATTTGCATTAGTGATGAGCAATATGATTGAGGTTTTTTACTATCCTGATGCAAACACAATGGAGAGGAAGACGAGGGAGTATGTCTTTGTGTATATTGGGGCAGGGCTTTATGCAGTTGTTGCTTATCTGGTGCAGCATTATTTCTTTAGTATTATGGGGGAGAATCTCACCACTAGGGTCAGGAGAATGATGCTTGCTGCTATTCTTAGAAATGAAGTTGGCTGGTTCGACGAGGAGGAGAACAATTCAAGCCTTGTGGCTGCCCGTTTGTCCACGGATGCGGCGGACGTCAAGTCTGCGATTGCGGAGAGGATCTCTGTGATACTTCAAAACATGACCTCACTGCTCACTTCTTTCATTGTCGGCTTTGTCGTCGAATGGAGGGTGGCACTTCTCATTCTTGCCACCTTCCCTCTTATTGTCCTTGCAAACTTCGCACAGCAACTTTCCTTGAAAGGTTTTGCCGGGGACACAGCAAAGGCTCATGCAAAGACTAGCATGATAGCTGGGGAAGGCGTCAGCAACATCCGTACTGTTGCAGCCTTCAACGCCCAAAACAAGGTGCTGTCCCTCTTCAGGCAAGAACTCCGAATTCCCCAGCGCCGCAGCCTTGGGCGCAGCCAGACTTCCGGATTTCTCTTCGGTCTTTCGCAGCTCGCCCTCTATGGATCGGAGGCCCTCATCCTTTGGTACGGTGCCCACCTTGTGAAGTCGGGGACTTCCACTTTTTCCCGTGTCATCAAGGTTTTTGTTGTCCTTGTCGTCACTGCCAACTCCGTTGCTGAGACCGTGAGCCTCGCGCCAGAGATAGTTCGTGGCGGGGAGTCCATTCGCTCTGTCTTTTCCATCCTGAATCGCAGCACTCGAATTGAATCTGAAGACCCCGAATCCGAGCCTGTGGATTCTGTCCGCGGCGAGATCGAGATTCGGCACGTTGACTTTGCTTACCCCTCCCGGCCAGAGGTCATCATTTTCAAAGATCTCAGCATTCGGATCCGCGCTGGACAGAGCCAGGCGCTCGTCGGTGCAAGCGGGTCCGGGAAAAGCTCGGTCATTGCGCTCATCGAGCGATTTTACGACCCCACTGGGGGAAAAGTCATGATCGACGGCAGGGACATCCGGCGGCTAAACCTCAAGTCCCTTCGGCTGAAGATTGGGCTTGTACAGCAGGAGCCATTGCTCTTTGCATCCACCATATTCGACAACATAGCGTACGGGAAGGACGGTGCGACGGAGGAGGAAGTCGTGGAAGCCGCACGGGCAGCAAATGTTCACAGCTTCGTGAGTGAGCTTCCGAATGCGTACAGGACATCAGTCGGCGAGAGGGGCGTCCAACTCTCTGGGGGGCAGAAGCAGAGGATTGCGATCGCGAGAGCGGTGCTCAAGGACCCGGCGGTCTTGCTGCTGGACGAGGCGACGAGCGCGCTGGATGCGGAATCGGAGTGCATGCTGCAGGAGGCCCTGAACAGGCTGATGAGGGGACGGACGACTGTGCTGGTAGCGCACCGTTTATCGACGATCCGAGGGGTCGATTGCATTGCTGTAGTGCAGGATGGGCGGATTGTCGAGAGCGGGAGCCATGCTGAGCTCGTGTCCCGGCCAGAGGGGGCATACTCTCGTCTGCTTCAGCTGCAGCACCATTCTATCTGATAGGAATGTTTTCGACGGCTGAATCAGGGTTTTGTTTGGTTGACGTGTTTTTGGGTTTGGATTATTGAACTGACCTGATTTTTTGTTTGGCGGAATGGTGGTGAGGAGGTTTGTGGTTTCTTAGTAGAACAAAAAATACAAAAAAATAGAGGGAGGTTTCAAAATGTGTCCAAAGATTTTAACCTGAGATGAGCTTCAGTCCTCTCTCAATTAATCCTCTTACTATTATAGCTGTATGAACTTTGGGCACAGTATGGTTCGTTCCTTTATGATGAGC

Network for GWHGAAEX006023

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	44	313	6.90E-58
PF00005.26	ABC_tran	382	530	8.40E-33
PF00664.22	ABC_membrane	689	959	7.60E-52
PF00005.26	ABC_tran	1029	1177	1.20E-31

Protein Sequence

>GWHPAAEX006023
MAEVTEGKVVVEAEKKKKEQSLAYYELFSFADRFDALLMAAGSIGAVVHGSAMPVFFLLFGDLVNGFGKNQTNLSKMTDEVSKYALYFVYLGLVVCISSYAEIACWMYSGERQSGALRRKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFISAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSREAYANAGIIAEQAIAQVRTVYSFAGEGKTLNTYSEAIQYTLKLGYKAGMAKGLGIGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGFKLLGLIRQKPSIIQDLADGKCLDEVYGNIEFKDVTFSYPSRPDVVIFRDFSLFFPAGKTVAVVGGSGSGKSTVVALIERFYDPNQGQVLLDNVDIRTLQLRWLRDQIGLVNQEPALFATTILENILYGKSDATIAEVEEAAAAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELIAKGNTGGYSSLIRFQEMARSRDFGAPSTRRSRSSRLSHSLSTKSLSLRSGSLRNLSYQYSSGADGRIEMVSNADNDRKYPAPDGYFFKLLKLNAPEWPYAVLGAVGSILSGFIGPTFALVMSNMIEVFYYPDANTMERKTREYVFVYIGAGLYAVVAYLVQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEENNSSLVAARLSTDAADVKSAIAERISVILQNMTSLLTSFIVGFVVEWRVALLILATFPLIVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKVLSLFRQELRIPQRRSLGRSQTSGFLFGLSQLALYGSEALILWYGAHLVKSGTSTFSRVIKVFVVLVVTANSVAETVSLAPEIVRGGESIRSVFSILNRSTRIESEDPESEPVDSVRGEIEIRHVDFAYPSRPEVIIFKDLSIRIRAGQSQALVGASGSGKSSVIALIERFYDPTGGKVMIDGRDIRRLNLKSLRLKIGLVQQEPLLFASTIFDNIAYGKDGATEEEVVEAARAANVHSFVSELPNAYRTSVGERGVQLSGGQKQRIAIARAVLKDPAVLLLDEATSALDAESECMLQEALNRLMRGRTTVLVAHRLSTIRGVDCIAVVQDGRIVESGSHAELVSRPEGAYSRLLQLQHHSI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.100
SRP064423	SRR2545915	Juvenile tuber	30.630
SRP108465	SRR5643513	five period of Gastrodia elata	11.270
	SRR5643514	five period of Gastrodia elata	14.710
	SRR5643515	five period of Gastrodia elata	11.710
	SRR5643524	five period of Gastrodia elata	13.700
	SRR5643525	five period of Gastrodia elata	5.170
	SRR5643528	five period of Gastrodia elata	4.360
	SRR5643658	five period of Gastrodia elata	5.410
	SRR5643659	five period of Gastrodia elata	39.240
	SRR5643660	five period of Gastrodia elata	40.950
	SRR5643661	five period of Gastrodia elata	43.300
	SRR5643662	five period of Gastrodia elata	18.610
	SRR5643663	five period of Gastrodia elata	29.910
	SRR5643664	five period of Gastrodia elata	13.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.980
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.430
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.890
SRP279888	Gastro	Gastrodia elata tuber	10.01
	Juven	Juvenile tuber	12.87
	Mother_Gastro	Mother tuber of Gastrodia elata	4.98
	Mother_Juven	Mother tuber of Juvenile	7.03