Gene detail

Detail information of GWHGAAEX006029/evm.TU.scaffold_176.45

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672175972\|ref\|XP_008808048.1\|	7.07E-79	PREDICTED: transcription factor TCP15 [Phoenix dactylifera]
Swissprot	tr\|Q9C9L2\|TCP15_ARATH	8.00E-54	Transcription factor TCP15
trEMBL	tr\|M0TII6\|M0TII6_MUSAM	5.00E-73	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P17990_001}
TAIR	AT1G69690	3.00E-53	TCP family transcription factor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000183	1544463	1547398	+

Transcript Sequence
>GWHTAAEX006029 CTTTCATACTATAATAGCTCATAATAATTGTGCATGTAAATACCTAATAACAACGGATTAAACCTTCTAAACCTTAACTGACATTCTTTCTACTGCTATAACCTCGTTCGGACATCAAAAACACCCATAGTTTCTCTCTTTGTGCCTTCTCCCTTACTCGTAGCTATCAGCTCTTCCTACCCACCACACCCATAAATTCAGATCGCTTTTGCCTTAATAAAAAAACCCATGCTCCGTAGAAATTAGCTGATTGATATTCCACTTTCCTTAATCCCTCCTCATGTTTCCCCAGCTAGCCACACAGCCCACACATCTGGATTCCGAATTCCTGCGCTTGATTCTTTCATAATTTTTAAAAAGCCCGCCACAGTGCTCTCTTTCATCTCTCTCTGAGGACCATTTAGAGGCAGGTGAGGTGGGTCTCTCCATAAAATATAGATCATGGCCTAAGCTGAAAGATGGAGGGGGAAAGCATCGGAGGAGGAGGAAATTCTTCTCGGCGGGCGAACTTCCCGCTGCAGCTCCTCGAGAAGAAGGAGCCGAACGTGGAGGACCTGACCTGCTCGACGTCTTCTGCGCTCGTGCCCTCGGAGGCGGCGGGAAAGAAGGTAGCGCCGAAGCGGAGCTCGACGAAGGACCGGCACACGAAGGTTGACGGGCGGGGGCGGCGCATCCGGATGCCGGCGCTGTGCGCAGCGCGCGTCTTCCAGCTGACGCGCGAGTTAGGGCACAAGTCCGACGGGGAGACGATCGAGTGGCTGCTTCAGCAGGCGGAGCCCGCCGTCATCGCCGCCACGGGGACTGGTACCATCCCTGCCAACTTCACGTCCCTCAACATCTCGCTGCGCAGCTCCGGTTCGAGCGTCTCCGCCGGCCCATCGCACCACCTCCGCTCTGCTGCTGCCGCCGCGCACTACTTCTCGCCGCGCTCCGAGTGGGACGCGCCCGCCGGCGGGCCCACCGTCCTCAGCTTCCACGATGGGCACGACACCGATGCCGCCACGAGCGCACGGAAGAGGCGATGGGACCACGAGCCGCACCACCAGCAGCAGCAGGCCATGGCGGGGTACACGACGGCCGCAGGATTGGCCCAGGGACAGATGCCAGGTGGCGCCGTCTGGGCTGCCGGCGACCCTGTGTGGCCTTTCGGCCAGGCGGGGTCCTTGTTCCGAGGGCCACTGTCGACCGGCCTGCATTTCATGAACTTCCCAGCAGCTGCTGCTGCTGCTCCTGTGGCCTTTCTTCCGGGCCAGCAGCTAGGGCTCGGCGGAAGCAGCGAGGGCCATTTGGGGATTCTCGCAGCGCTGAACTCCTATCGGCCAGCCGGGCCGACACAGGATACGCAGGCTGGGACAGCTCATTATCATTACCGCCATCATTTTCAGCAGCATCAGCAGCAGCAGCAACAGCAAAGCAGTGGTGGTGGGAGAGAGAGGAATGACACGATGAGCGCTACTGACTCCTAGCTCGGTTTCTTTCTTCCCTGCTACTTTTATTATTTATTTATCCTTTTTCCATCTCTTTGATTTGTTCTTTGCTGAGGTTTTGCCTTTTTCTTTTAATTTTCTTTTTTTTTTCTTACGTGTTTTAATTATCTTGCGAATTCGACTTCAGTCTTATTAATATATATCATCAAGGTTTTTTCCCCTTTCTTTCTGCGGGTTCTTAGTTAATCATCAGATGCATATCCCTAATTAAAGCTATTCTTTATTATAACATCACTTTGTATTTAATTTTCCTATTTCGTTTCTTCCCTAACCCTAAATCTCCCATTGCACGATTAATGCTCTCTTTTTTTCCCGAATTGATTCATATCTTCTTATTTTGTTTATGCAAGCTGTGTAAATCTTCTAGATTGAACTAACACTGGGGACTGTTCTTCTTTCTTTCAGTGCCGGTATATATATATATATATTGTTCAAGATATTCTTCTTCCACTTTCAAATATAATACATATACATCAGTTAGTGAAAATTGAAAGCAGTAAAAAAGGCCTAGTTGAGCACTGCTGCACTGATTAAAAAACTGACAAGAAATCGTCAATGCGACTGCTGGCTGAATAATATTTGAAAATATACAAGTTATCTGCGTTTTTACTTTGCTCTATTGTAAGGTTAACAAAGAAAGAGTTTTACAGCTAAATATGATTATTGCTATAAGCATGCTTAAGCGAGGGTGAGTGGGGGCCGTCTCACAGATTTCCATTTCTGCATTTCAGAGTTGGGGAGATGGGAAAATGCAGAGAAAAGGGCCAAACGGGATTTAATTACTTGCAAGAGCTGTCGGTTGTTTGGTTCCCAAATTTGAGCTGTCACATGTTTGATTTCGCTTTAGAAACCATAGCTAATATTTTTAGCAAAGGGTTCGGTTTCTCTCTCTATCAGGTGGAACCCAGCTGTTGGGTTCTTATCCTTAGCTTCTTTATTGCTTTCAGATGGGGACATGAGATCCCCCACTCCACAGCAACTCAGCTACAGTCTCCAGTATGCGTTCTCCGTAGAACCAAAAATGACCTGTTTTCTTTCATCTTTTTTTCTTACTTTTAAGTATGGCTTCCTTGCGGATTCGTAAGCAAAAAACTTGCTCACTTACTTAATTTCTTGCTGTGTGAGGTAGCTCTGAAGTAGCATCTAGCTTGTTTTATGTTTTATTTTAATTTGGTGTGATGAGAGAAGAGAGCAGGCACGAGCACTCACACACATGCATGTACTGATCAGAAACAGAGCCTCATTTGGCTGCTTTTACCTTTATGACTGGCCTGGACAAATGAGGTAGCTGAAAAGGACTGTTTTCTTGTGCATTTAGTTGGCTGTTGAGCCTTTCGCTAACTTACTCAATATTCATTACTCTCTGTATTGTTTACCGAAAGCTAGTTTCTCTCACTGTGCCTTAATCGCTCATCCCCAGTCAAATATAATATCATTTATAGACTTATT

Network for GWHGAAEX006029

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03634.12	TCP	57	199	4.40E-41

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TCP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.330
SRP064423	SRR2545915	Juvenile tuber	47.480
SRP108465	SRR5643513	five period of Gastrodia elata	35.040
	SRR5643514	five period of Gastrodia elata	40.570
	SRR5643515	five period of Gastrodia elata	28.610
	SRR5643524	five period of Gastrodia elata	35.780
	SRR5643525	five period of Gastrodia elata	15.530
	SRR5643528	five period of Gastrodia elata	7.150
	SRR5643658	five period of Gastrodia elata	17.650
	SRR5643659	five period of Gastrodia elata	67.330
	SRR5643660	five period of Gastrodia elata	74.200
	SRR5643661	five period of Gastrodia elata	68.610
	SRR5643662	five period of Gastrodia elata	45.570
	SRR5643663	five period of Gastrodia elata	57.230
	SRR5643664	five period of Gastrodia elata	66.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	59.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.140
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	58.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.790
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	54.770
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.300
SRP279888	Gastro	Gastrodia elata tuber	51.97
	Juven	Juvenile tuber	70.73
	Mother_Gastro	Mother tuber of Gastrodia elata	5.06
	Mother_Juven	Mother tuber of Juvenile	14.32