Detail information of GWHGAAEX006036/evm.TU.scaffold_176.55


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|46446524|ref|YP_007889.1|2.00E-1763,4-dihydroxy-2-butanone 4-phosphate synthase [Candidatus Protochlamydia amoebophila UWE25]
KOGKOG12840Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase
nrgi|743859175|ref|XP_010942615.1|0PREDICTED: probable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic isoform X1 [Elaeis guineensis]
Swissprottr|Q6Z234|RIBA1_ORYSJ0GTP cyclohydrolase-2 (Precursor)
trEMBLtr|M0RL60|M0RL60_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P24850_001}
TAIRAT5G643000GTP cyclohydrolase II

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000018320460272062466+
Transcript Sequence

Network for GWHGAAEX006036

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00926.18DHBP_synthase1193129.70E-83
PF00925.19GTP_cyclohydro23244871.90E-72
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14652ribBA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Riboflavin metabolismmap00740
Folate biosynthesismap00790

Gene Ontology

GO term OntologyName
GO:0009231Biological Processriboflavin biosynthetic process
GO:0003935Molecular FunctionGTP cyclohydrolase II activity
GO:0008686Molecular Function3,4-dihydroxy-2-butanone-4-phosphate synthase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms615.060
SRR2545915Juvenile tuber412.250
SRP108465SRR5643513five period of Gastrodia elata177.880
SRR5643514five period of Gastrodia elata118.520
SRR5643515five period of Gastrodia elata133.470
SRR5643524five period of Gastrodia elata115.890
SRR5643525five period of Gastrodia elata213.240
SRR5643528five period of Gastrodia elata166.080
SRR5643658five period of Gastrodia elata205.440
SRR5643659five period of Gastrodia elata308.120
SRR5643660five period of Gastrodia elata366.650
SRR5643661five period of Gastrodia elata271.050
SRR5643662five period of Gastrodia elata317.360
SRR5643663five period of Gastrodia elata360.750
SRR5643664five period of Gastrodia elata451.900
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1350.380
SRR6049655Rhizomagastrodiae_C368-T10_good_1207.130
SRR6049656Rhizomagastrodiae_C368-T07_good_1244.070
SRR6049657Rhizomagastrodiae_C368-T07_good_1481.020
SRR6049658Rhizomagastrodiae_C368-T04_good_1580.050
SRR6049659Rhizomagastrodiae_C368-T04_good_1736.550
SRR6049660Rhizomagastrodiae_C368-T01_good_1421.090
SRR6049661Rhizomagastrodiae_C368-T04_good_1485.980
SRR6049662Rhizomagastrodiae_C368-T01_good_1149.550
SRR6049663Rhizomagastrodiae_C368-T01_good_1243.170
SRR6049664Rhizomagastrodiae_C368-T10_good_1168.820
SRR6049665Rhizomagastrodiae_C368-T10_good_1168.820
SRP279888GastroGastrodia elata tuber 345.21
JuvenJuvenile tuber312.89
Mother_GastroMother tuber of Gastrodia elata 157.61
Mother_JuvenMother tuber of Juvenile 239.05