Detail information of GWHGAAEX006042/evm.TU.scaffold_177.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 7.00E-122 | FOG: PPR repeat |
| nr | gi|672176965|ref|XP_008808564.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SY02|PP301_ARATH | 2.00E-122 | Pentatricopeptide repeat-containing protein At4g02750 |
| trEMBL | tr|M8BDX6|M8BDX6_AEGTA | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMT12171.1} |
| trEMBL | tr|M8BDX6|M8BDX6_AEGTA | 5.00E-29 | Uncharacterized protein {ECO:0000313|EMBL:EMT12171.1} |
| trEMBL | tr|M8BDX6|M8BDX6_AEGTA | 2.00E-21 | Uncharacterized protein {ECO:0000313|EMBL:EMT12171.1} |
| TAIR | AT4G02750 | 7.00E-122 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000185 | 113585 | 115381 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006042
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 7 | 36 | 5.10E-05 |
| PF01535.19 | PPR | 38 | 68 | 0.015 |
| PF01535.19 | PPR | 173 | 198 | 2.50E-07 |
| PF01535.19 | PPR | 204 | 231 | 3.50E-05 |
| PF01535.19 | PPR | 234 | 263 | 2.40E-06 |
| PF01535.19 | PPR | 265 | 289 | 0.00035 |
| PF01535.19 | PPR | 296 | 322 | 0.0051 |
| PF13041.5 | PPR_2 | 395 | 441 | 1.10E-09 |
| PF12854.6 | PPR_1 | 462 | 493 | 2.40E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.640 |
| SRR2545915 | Juvenile tuber | 17.950 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.250 |
| SRR5643514 | five period of Gastrodia elata | 4.150 | |
| SRR5643515 | five period of Gastrodia elata | 5.560 | |
| SRR5643524 | five period of Gastrodia elata | 4.470 | |
| SRR5643525 | five period of Gastrodia elata | 1.880 | |
| SRR5643528 | five period of Gastrodia elata | 6.860 | |
| SRR5643658 | five period of Gastrodia elata | 0.950 | |
| SRR5643659 | five period of Gastrodia elata | 6.150 | |
| SRR5643660 | five period of Gastrodia elata | 4.790 | |
| SRR5643661 | five period of Gastrodia elata | 4.440 | |
| SRR5643662 | five period of Gastrodia elata | 4.900 | |
| SRR5643663 | five period of Gastrodia elata | 4.760 | |
| SRR5643664 | five period of Gastrodia elata | 4.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.230 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.910 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.88 |
| Juven | Juvenile tuber | 6.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.88 | |
| Mother_Juven | Mother tuber of Juvenile | 10.98 |