Detail information of GWHGAAEX006047/evm.TU.scaffold_177.15


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41977.00E-46FOG: PPR repeat
nrgi|695071165|ref|XP_009382642.1|0PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9FVX2|PP129_ARATH6.00E-46Pentatricopeptide repeat-containing protein At1g77360, mitochondrial (Precursor)
trEMBLtr|M0RPX6|M0RPX6_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P06460_001}
TAIRAT1G773607.00E-46Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000185270416282613+
Transcript Sequence

Network for GWHGAAEX006047

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR1351610.033
PF13041.5PPR_23103521.90E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms48.010
SRR2545915Juvenile tuber43.960
SRP108465SRR5643513five period of Gastrodia elata25.600
SRR5643514five period of Gastrodia elata20.480
SRR5643515five period of Gastrodia elata19.580
SRR5643524five period of Gastrodia elata19.620
SRR5643525five period of Gastrodia elata37.740
SRR5643528five period of Gastrodia elata25.430
SRR5643658five period of Gastrodia elata38.360
SRR5643659five period of Gastrodia elata42.140
SRR5643660five period of Gastrodia elata59.180
SRR5643661five period of Gastrodia elata42.860
SRR5643662five period of Gastrodia elata53.870
SRR5643663five period of Gastrodia elata51.930
SRR5643664five period of Gastrodia elata73.660
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_155.670
SRR6049655Rhizomagastrodiae_C368-T10_good_148.960
SRR6049656Rhizomagastrodiae_C368-T07_good_135.790
SRR6049657Rhizomagastrodiae_C368-T07_good_173.160
SRR6049658Rhizomagastrodiae_C368-T04_good_170.960
SRR6049659Rhizomagastrodiae_C368-T04_good_183.100
SRR6049660Rhizomagastrodiae_C368-T01_good_162.280
SRR6049661Rhizomagastrodiae_C368-T04_good_156.870
SRR6049662Rhizomagastrodiae_C368-T01_good_129.690
SRR6049663Rhizomagastrodiae_C368-T01_good_136.840
SRR6049664Rhizomagastrodiae_C368-T10_good_126.980
SRR6049665Rhizomagastrodiae_C368-T10_good_126.980
SRP279888GastroGastrodia elata tuber 44.42
JuvenJuvenile tuber58.87
Mother_GastroMother tuber of Gastrodia elata 24.22
Mother_JuvenMother tuber of Juvenile 38.36