Gene detail

Detail information of GWHGAAEX006049/evm.TU.scaffold_177.17

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|336121871\|ref\|YP_004576646.1\|	1.00E-61	RNA-metabolising metallo-beta-lactamase [Methanothermococcus okinawensis IH1]
KOG	KOG1137	0	mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit)
nr	gi\|743815335\|ref\|XP_010930313.1\|	0	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Elaeis guineensis]
Swissprot	tr\|Q9C952\|CPSF3_ARATH	0	Cleavage and polyadenylation specificity factor subunit 3-I
trEMBL	tr\|F6HK83\|F6HK83_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55086.1}
TAIR	AT1G61010	0	cleavage and polyadenylation specificity factor 73-I

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000185	410637	421061	+

Transcript Sequence
>GWHTAAEX006049 AATTATCAGCCGTTTGTGGTAAAAGTGCGGAGGCTGCAAGAGGACCTCGGTCTACTTTGTTTCCATTCTGCGATGTCTCTCCAGCTAGGGTTTATGGGCAAGGTTTAGGACAGAGCGGCTATTGGTCTAACGTGCGCTGGAAGATTGGTCACTTTGAAAGGGATCTAATCGAACATCATTGACAAAGCTTTTGGTTGGAAAATTCGTAAATGGCTTCCATTGTGACTGGCCAGGGATCGACTTTAAAGAGGAGAGATTCATCACTGGAGAGGGAGGGGGATCAGTTAATCATCACGCCCTTAGGCGCCGGTAATGAAGTGGGGCGCTCCTGCGTGTATATGTCTTACAGAGGAAAAATTGTCTTGTTCGATTGCGGAATACACCCAGCTTACTCTGGGATGGCTGCACTTCCGTATTTTGACGAGATTGATCCTTCAACCATTGATGTTCTTCTTGTTACACATTTTCATTTAGATCATGCTGCTTCTCTTCCATATTTCTTAGAGAAGACTACTTTTAGGGGCAGAGTTTTCATGACCCATGCCACAAAAGCTATTTACAGATTGCTTTTGTCTGATTATGTTAAAGTGAGCAAAGTTTCTGTTGAAGACATGCTGTATGATGAGCAAGATATCCTTCGTTCCATGGATAAAATTGAAGTTATTGATTTCCACCAGACGGTGGAAGTGAATGGAATTCGTTTCTGGTGTTACACTGCTGGTCATGTCCTGGGTGCTGCCATGTTTATGGTTGACGTTGCTGGCGTTCGAGTTCTTTACACTGGCGATTATTCTCGCGAGGAAGATCGTCACCTTCGTGCTGCCGAAACCCCACAGTTCTCTCCTGATATATGCATCATAGAGTCCACGTATGGTGTGCAGCTCCACCAGCCACGCCTTGTACGGGAGAAGCGCTTCACAGATGTGATTCATTCAACCGTATCTCAAGGAGGGCGGGTGCTTATTCCAGCATTTGCTCTGGGGAGAGCTCAGGAGCTCCTCCTCATCTTGGATGAGTATTGGTCCAGCCATCCGGAGCTCCACAACATCCCCATCTATTATGCCTCCCCTCTGGCTAAGCGATGCATGGCCGTTTACCAGACGTACATCAATGCGATGAACGAGAGGATACGGAACCAATTTGCAAACTCAAATCCCTTTGATTTCAAACACATATCCCCTTTGAAGAGTATAGAAAACTTTGATGATGTCGGCCCATCAGTGGTGATGGCAAGCCCAGGTGGTTTGCAGAGTGGCCTTTCAAGGCAACTGTTTGATAAGTGGTGCACAGACAAGAAGAATGCCTGTGTGATTCCTGGTTATGTAGTGGAAGGGACACTTGCAAAGACCATAATCAACGAGCCCAAAGAGGTGACTTTATTGAACGGTCTCACTGCTCCTCTCAACATGCAGGTGTACTACATTTCCTTCTCTGCTCACGCTGACTTTGCTCAGACAAGCACGTTCTTGAAGGAACTCATGCCTCCCAACATAATTCTTGTCCATGGAGAAGCGAATGAGATGACCAGGCTCAAACAAAAGCTCATTTCCCAATTCTCTGATCAAAATACGAAGATAATGTCACCAAAGAATTGCCAGTCTGTGGAGATGTACTTTAGCTCTGAAAAAATGGCTAAGACAATTGGAAGGCTGGCTGAGAGGACGCCTGAAGTTAGTGATATCGTCAGTGGAGTGCTGGTTAAGAAAGGCTTCACATATCAGATTATGGCATCAGAAGACCTTCATGTTTTCTCTCAGCTGTCCACAGCAAACATAACCCAGAGGATCTCCGTACCTTATACCGGTGCTTTTGGGGTCATAAAGCACAGGCTGAGTCAGATGTATGAAAGTGTGGTGCCCTCCCTGCAGTCGGAAGATGGCGAAGAGGCAGATGTCCCCACTCTGATTGTTCACGAGAGGGTAACGATAAGGCAGCAGACTGAGAACCTTGTGAGCTTGCAGTGGTCTTCTGATCCTATCAGTGATATGGTCTCAGATTCAATTGTGGCTTTAATATTGAACATATACAGGGAAGGTCCTAAAGTAATAATTCCTGCTGCTGCAGCAGAGAACAGCAACAACCAGAGGGGTGAGGAGGAGACGGAAAAGATGGCGTGGAAGGTAACATTTGCCTTGCTGACTTCCCTCTTTGGTGATGTGAAGGTTGGTGGGGAAGGGAAACTGATCATCACTGTCGATGGCGATGTTGCTTGTTTGGATGGGAAGAATGGCGAAGTTGAGTGCCAGAATGAGGCTCTCAAGGACAGAGTCAGGATGGCATTTCAGCGCATTCAAAGTGTTGTCAGGCCTATCCCGCTCTCATACTCGCCTTAACTTGTTAGGTTTCCTTTTCCTTGTTTTAAAGAGCTTCGCCCTCGCTGAAACCATTATTATTTAGAAAAAAACTGGCGGCAGCTGTGATTGTGTATGAGGAACTATTTATCTAAAAGCCATTTTGGCGGTGATGAAATTGTTTGGGTTCACTCAATCCATGCCTTGGAAGTGACAGCTCCTTCAAAAGCACAGTGACGATGGACAAATAATTCAGATTGATTTGCTTTTAGAATTTGCAGGAGTTGTTTATCTAGAATGGCGAGTGACTATTTTCATTGCAGGAAGGTATCACAGCAATAGATAACACATGTAATGGGAAAATTTGGGCTTTTTAGTTATATGCCTTCAGGAACCAACTAGATCTTCTCTTTACATTAATAAGGTTTTCTATGGTTTCAAAATTTTCTAGTTCTTCTTGCTTTGTTATCTAATGGTTTGTATATTGTTTAAGGTTTATCTTTTGGAGGGTCTAAGATGATTATGCAAGTTTATGTTTTTGTTAATGTAGTTTAGTGCAAACGTTCTGTGAAGTATAGCACAGGCTTTGTGGGTTGCATCAGAAGTTGCAAAAATGAATAAAAGCTATTCCTCGTATACTCCATTTTTAATACCAAAGTTATTG

Network for GWHGAAEX006049

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00753.26	Lactamase_B	37	202	4.70E-20
PF10996.7	Beta-Casp	260	381	1.30E-29
PF07521.11	RMMBL	395	449	3.00E-18
PF11718.7	CPSF73-100_C	491	700	3.70E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14403	CPSF3, YSH1	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.010
SRP064423	SRR2545915	Juvenile tuber	24.890
SRP108465	SRR5643513	five period of Gastrodia elata	35.900
	SRR5643514	five period of Gastrodia elata	31.520
	SRR5643515	five period of Gastrodia elata	30.920
	SRR5643524	five period of Gastrodia elata	31.320
	SRR5643525	five period of Gastrodia elata	27.210
	SRR5643528	five period of Gastrodia elata	21.070
	SRR5643658	five period of Gastrodia elata	24.700
	SRR5643659	five period of Gastrodia elata	45.330
	SRR5643660	five period of Gastrodia elata	48.790
	SRR5643661	five period of Gastrodia elata	44.170
	SRR5643662	five period of Gastrodia elata	46.280
	SRR5643663	five period of Gastrodia elata	43.810
	SRR5643664	five period of Gastrodia elata	48.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.450
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.910
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.910
SRP279888	Gastro	Gastrodia elata tuber	43.07
	Juven	Juvenile tuber	76.22
	Mother_Gastro	Mother tuber of Gastrodia elata	24.10
	Mother_Juven	Mother tuber of Juvenile	44.58