Detail information of GWHGAAEX006050/evm.TU.scaffold_177.18
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743860325|ref|XP_010942983.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|Q9LIE7|PP246_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g22150, chloroplastic (Precursor) |
| trEMBL | tr|A2XX70|A2XX70_ORYSI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:EAY95430.1} |
| TAIR | AT3G22150 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000185 | 422579 | 425035 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006050
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 71 | 95 | 0.014 |
| PF13041.5 | PPR_2 | 176 | 223 | 2.60E-07 |
| PF01535.19 | PPR | 286 | 311 | 8.40E-05 |
| PF13041.5 | PPR_2 | 386 | 432 | 1.70E-07 |
| PF13041.5 | PPR_2 | 490 | 536 | 2.20E-13 |
| PF13041.5 | PPR_2 | 590 | 637 | 5.40E-12 |
| PF01535.19 | PPR | 664 | 688 | 0.25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.710 |
| SRR2545915 | Juvenile tuber | 6.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.920 |
| SRR5643514 | five period of Gastrodia elata | 4.110 | |
| SRR5643515 | five period of Gastrodia elata | 3.540 | |
| SRR5643524 | five period of Gastrodia elata | 4.610 | |
| SRR5643525 | five period of Gastrodia elata | 2.450 | |
| SRR5643528 | five period of Gastrodia elata | 1.360 | |
| SRR5643658 | five period of Gastrodia elata | 2.160 | |
| SRR5643659 | five period of Gastrodia elata | 5.060 | |
| SRR5643660 | five period of Gastrodia elata | 4.860 | |
| SRR5643661 | five period of Gastrodia elata | 5.120 | |
| SRR5643662 | five period of Gastrodia elata | 3.590 | |
| SRR5643663 | five period of Gastrodia elata | 4.550 | |
| SRR5643664 | five period of Gastrodia elata | 4.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.890 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.64 |
| Juven | Juvenile tuber | 12.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.16 | |
| Mother_Juven | Mother tuber of Juvenile | 7.97 |