Detail information of GWHGAAEX006060/evm.TU.scaffold_177.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08115.00E-24SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17
nrgi|590679731|ref|XP_007040664.1|5.25E-30Syntaxin/t-SNARE family protein [Theobroma cacao]
Swissprottr|P93654|SYP22_ARATH9.00E-26Syntaxin-22
trEMBLtr|A0A061G5T4|A0A061G5T4_THECC2.00E-30Syntaxin/t-SNARE family protein {ECO:0000313|EMBL:EOY25165.1}
TAIRAT4G177305.00E-24syntaxin of plants 23

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000185578857597119+
Transcript Sequence

Network for GWHGAAEX006060

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14523.5Syntaxin_230713.00E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.670
SRR2545915Juvenile tuber7.560
SRP108465SRR5643513five period of Gastrodia elata6.150
SRR5643514five period of Gastrodia elata4.350
SRR5643515five period of Gastrodia elata6.810
SRR5643524five period of Gastrodia elata6.200
SRR5643525five period of Gastrodia elata12.060
SRR5643528five period of Gastrodia elata7.030
SRR5643658five period of Gastrodia elata7.770
SRR5643659five period of Gastrodia elata5.290
SRR5643660five period of Gastrodia elata9.850
SRR5643661five period of Gastrodia elata3.800
SRR5643662five period of Gastrodia elata9.240
SRR5643663five period of Gastrodia elata4.970
SRR5643664five period of Gastrodia elata9.170
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.720
SRR6049655Rhizomagastrodiae_C368-T10_good_110.620
SRR6049656Rhizomagastrodiae_C368-T07_good_15.590
SRR6049657Rhizomagastrodiae_C368-T07_good_19.210
SRR6049658Rhizomagastrodiae_C368-T04_good_15.610
SRR6049659Rhizomagastrodiae_C368-T04_good_19.060
SRR6049660Rhizomagastrodiae_C368-T01_good_14.460
SRR6049661Rhizomagastrodiae_C368-T04_good_111.710
SRR6049662Rhizomagastrodiae_C368-T01_good_14.130
SRR6049663Rhizomagastrodiae_C368-T01_good_13.460
SRR6049664Rhizomagastrodiae_C368-T10_good_111.020
SRR6049665Rhizomagastrodiae_C368-T10_good_111.020
SRP279888GastroGastrodia elata tuber 1.97
JuvenJuvenile tuber1.50
Mother_GastroMother tuber of Gastrodia elata 3.84
Mother_JuvenMother tuber of Juvenile 2.84