Detail information of GWHGAAEX006070/evm.TU.scaffold_177.38
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2386 | 4.00E-91 | mRNA capping enzyme, guanylyltransferase (alpha) subunit |
| nr | gi|743802427|ref|XP_010926613.1| | 3.54E-135 | PREDICTED: mRNA-capping enzyme-like isoform X2 [Elaeis guineensis] |
| trEMBL | tr|M0TIH2|M0TIH2_MUSAM | 1.00E-134 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P17850_001} |
| TAIR | AT5G01290 | 4.00E-91 | mRNA capping enzyme family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000185 | 703031 | 707717 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006070
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01331.18 | mRNA_cap_enzyme | 1 | 124 | 3.40E-33 |
| PF03919.14 | mRNA_cap_C | 128 | 227 | 1.60E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13917 | RNGTT | mRNA surveillance pathway | map03015 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006370 | Biological Process | 7-methylguanosine mRNA capping |
| GO:0006310 | Biological Process | DNA recombination |
| GO:0006281 | Biological Process | DNA repair |
| GO:0003910 | Molecular Function | DNA ligase (ATP) activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004484 | Molecular Function | mRNA guanylyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.480 |
| SRR2545915 | Juvenile tuber | 33.450 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 38.120 |
| SRR5643514 | five period of Gastrodia elata | 38.510 | |
| SRR5643515 | five period of Gastrodia elata | 36.210 | |
| SRR5643524 | five period of Gastrodia elata | 41.340 | |
| SRR5643525 | five period of Gastrodia elata | 34.740 | |
| SRR5643528 | five period of Gastrodia elata | 39.540 | |
| SRR5643658 | five period of Gastrodia elata | 37.740 | |
| SRR5643659 | five period of Gastrodia elata | 40.680 | |
| SRR5643660 | five period of Gastrodia elata | 42.970 | |
| SRR5643661 | five period of Gastrodia elata | 38.720 | |
| SRR5643662 | five period of Gastrodia elata | 39.800 | |
| SRR5643663 | five period of Gastrodia elata | 38.700 | |
| SRR5643664 | five period of Gastrodia elata | 42.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 32.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 35.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 31.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.380 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 35.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 32.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 33.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 33.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 63.90 |
| Juven | Juvenile tuber | 51.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 98.83 | |
| Mother_Juven | Mother tuber of Juvenile | 77.99 |