Detail information of GWHGAAEX006071/evm.TU.scaffold_177.39
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2386 | 7.00E-132 | mRNA capping enzyme, guanylyltransferase (alpha) subunit |
| nr | gi|695044455|ref|XP_009409979.1| | 0 | PREDICTED: mRNA-capping enzyme [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0TIH2|M0TIH2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P17850_001} |
| TAIR | AT3G09100 | 7.00E-132 | mRNA capping enzyme family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000185 | 707752 | 739255 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006071
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00782.19 | DSPc | 142 | 260 | 4.30E-13 |
| PF01331.18 | mRNA_cap_enzyme | 355 | 413 | 1.40E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13917 | RNGTT | mRNA surveillance pathway | map03015 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016311 | Biological Process | dephosphorylation |
| GO:0006370 | Biological Process | 7-methylguanosine mRNA capping |
| GO:0006470 | Biological Process | protein dephosphorylation |
| GO:0004484 | Molecular Function | mRNA guanylyltransferase activity |
| GO:0004651 | Molecular Function | polynucleotide 5'-phosphatase activity |
| GO:0008138 | Molecular Function | protein tyrosine/serine/threonine phosphatase activity |
| GO:0016791 | Molecular Function | phosphatase activity |
| GO:0004725 | Molecular Function | protein tyrosine phosphatase activity |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.810 |
| SRR2545915 | Juvenile tuber | 22.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.530 |
| SRR5643514 | five period of Gastrodia elata | 22.080 | |
| SRR5643515 | five period of Gastrodia elata | 23.470 | |
| SRR5643524 | five period of Gastrodia elata | 24.780 | |
| SRR5643525 | five period of Gastrodia elata | 18.150 | |
| SRR5643528 | five period of Gastrodia elata | 19.880 | |
| SRR5643658 | five period of Gastrodia elata | 20.390 | |
| SRR5643659 | five period of Gastrodia elata | 20.570 | |
| SRR5643660 | five period of Gastrodia elata | 25.510 | |
| SRR5643661 | five period of Gastrodia elata | 20.910 | |
| SRR5643662 | five period of Gastrodia elata | 23.590 | |
| SRR5643663 | five period of Gastrodia elata | 19.940 | |
| SRR5643664 | five period of Gastrodia elata | 23.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 23.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.170 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.96 |
| Juven | Juvenile tuber | 32.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 43.04 | |
| Mother_Juven | Mother tuber of Juvenile | 58.98 |