Detail information of GWHGAAEX006073/evm.TU.scaffold_177.42
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428313246|ref|YP_007124223.1| | 7.00E-23 | methylase [Microcoleus sp. PCC 7113] |
| KOG | KOG1269 | 0 | SAM-dependent methyltransferases |
| nr | gi|743775538|ref|XP_010918151.1| | 0 | PREDICTED: 24-methylenesterol C-methyltransferase 2 [Elaeis guineensis] |
| Swissprot | tr|O82427|SMT2_ORYSJ | 0 | 24-methylenesterol C-methyltransferase 2 |
| trEMBL | tr|I1HA07|I1HA07_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G76020.1} |
| TAIR | AT1G20330 | 0 | sterol methyltransferase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000185 | 808303 | 812794 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006073
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08241.11 | Methyltransf_11 | 131 | 228 | 1.50E-21 |
| PF08498.9 | Sterol_MT_C | 294 | 357 | 2.00E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08242 | E2.1.1.143 | Biosynthesis of secondary metabolites | map01110 |
| Steroid biosynthesis | map00100 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006694 | Biological Process | steroid biosynthetic process |
| GO:0008168 | Molecular Function | methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 66.570 |
| SRR2545915 | Juvenile tuber | 84.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 173.020 |
| SRR5643514 | five period of Gastrodia elata | 182.020 | |
| SRR5643515 | five period of Gastrodia elata | 202.340 | |
| SRR5643524 | five period of Gastrodia elata | 182.780 | |
| SRR5643525 | five period of Gastrodia elata | 136.690 | |
| SRR5643528 | five period of Gastrodia elata | 160.220 | |
| SRR5643658 | five period of Gastrodia elata | 120.010 | |
| SRR5643659 | five period of Gastrodia elata | 321.100 | |
| SRR5643660 | five period of Gastrodia elata | 281.740 | |
| SRR5643661 | five period of Gastrodia elata | 332.340 | |
| SRR5643662 | five period of Gastrodia elata | 257.910 | |
| SRR5643663 | five period of Gastrodia elata | 231.130 | |
| SRR5643664 | five period of Gastrodia elata | 265.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 184.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 154.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 184.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 159.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 135.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 142.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 170.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 157.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 210.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 206.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 198.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 198.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 92.68 |
| Juven | Juvenile tuber | 64.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 104.95 | |
| Mother_Juven | Mother tuber of Juvenile | 49.92 |