Gene detail

Detail information of GWHGAAEX006074/evm.TU.scaffold_177.43

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4524	Uncharacterized conserved protein
nr	gi\|743826881\|ref\|XP_010933429.1\|	PREDICTED: uncharacterized protein LOC105053825 [Elaeis guineensis]
trEMBL	tr\|F6H9X3\|F6H9X3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49016.1}
TAIR	AT1G79190	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000185	813793	862538	+

Transcript Sequence
>GWHTAAEX006074 CTGAATTATTCTTCAGATTATAATTTTACGCGAGCGAAGTCCTGTCATCCATTCCCAGCGTAAGGCTCGCTGCCCATCTCAGCTTCTTAATGTCAGGCGTTGGGAGCAATCCTCAAAACCCAACGAACAACCAAAACATGGGAAAACTTGATGGCAAGTGCGGCGGCACCCCCTCGAATGAAACTACAGAGCGCGTTTTCTCTCGCCTCAGAATTTACTGTACTGAAATCTTTGGCCTCACGCAAAACCCTAGGAAGAAGTCGCCCTCCCTTTCCGAGATGGCGGACTTCCTTGGCCGCACTCCCGATCACGCCCTTCAGCCCTTCCTCGATTATTCCTTGTTCCCTCTTCTGCTTCTACTGGATGCGGCCGTCCAGTGCAGGTCCGGACAGAAAGCCAAATCAAATTGTCAAGTGATTACTGATTCCGTTGCTGAATGCACGTTGAAGTGCCTCGAGGAACTTTTGAAGAAATGTCATTTAGGATCTGTGAATCAGATGGTTTTGGTGCTAAAAAAGTTAGCTTCTGGTGCTTTGCTTTTACCATCCGAGGCATCAGAAGAATTTCGCGAAGGCATAGTAAAATGCGTAAAATTTATGCTTCTCAGGCTGCAACCTTGTTCTGCAGGATCTTGTTCATGCAAGGAAATTACAGTTTTTTCTACGCTGGTTGCCACATTGGAACACTGTATACCTAACCCATCTTGTTTTGAAGAATCAGATGAATGTTTGATTTCATTTCTTCAATCAAAGGACGCTTCTGCTGCTGTAGGCCACTGGCTTTCGCTTCTTCTTCAGACTGCAGAGGCAGAGGCTGCTAGAGGGCATCAAGGATGTGCAACTCTTAGGAAAGAAGCATATCTTACCCTCCGTGTGCTTGTTTCTAAGGTTGGCACTGCTGATGCGCTTGCTTATTTTCTTCCGGGTACAGTTAGTTGTTTTACGAGAGCTTTACTTGCGACAAAAACAATGTTAAGTGGAGCTGCTGGAAATGCTGGGAGCATTGAACAGGCAGTTTTGGGACTAACAGAGTTCTTGGTAATTGTTTTAAGGGATAATGCAAATTTGAGGGGCCTGCAGATGCCTACTAGTGAATTAACCTGCACTAACCAGAACAAGAACGGATCATCCCAAACAGTCCTGGATTTACTCCGTCATTTACCTGCCACTCTTCACAAGCAATCGGAAGATTCAGCCTGTCAATCAGACCACACTCTTTTAAAAGATGAGAATAATGTGAAAAATCATTATATTTTTTCTGAAGCTAGATCATTGTATGTACAGCGAACAAAGACTTGGGTAGATCAAACTTCTGCTCATGTTGATAAATTGTTGTCTGCCACATTTCCACATCTTTGTGTTCACCCTGCTGAGAAAGTAAAGAAAGCAGTTGCAGATAGTATCATGTCTTTATTGTCAAACTGCAGTTTGACTTTACACAGGAGTAGACTAATGCTTGTAGAGTGTTTGTGCGTTCTTGCATGTGATGATTCAGAAGTTGTGTCTAGTACTGCAGAAGATTCCCTCAATTCTCTCTTCATGTCTGACAAAAAACTTTTTACAGAGACTGACATTCCGGAGTTATTTTCGAGCTTTCTAGAAAAACTTCCAAAGGCGATTCATAGGAGCGAAGAAATAGTTGCACTATCACATGCACGAAGATTGCTCGCATTAATGTATTATGCGGGGCCGGACCTAGTGGTTAACCACATTTTCTGCTCACCTATGAAAGCAGCTGGTTTCTTGGATTTTTTGATGCTTTCTTTAGGTCATAATTCACAGTTTACTGGCCCCATTGATAAGCTTATTTCATCTAAGTCACTCTCAATTGGTTACCTACTCTCAGTTGCTGAGTTGAAGGCAGGCTCTCTTTCTAGTGATTCAAGTCATGCTTTAAGGAGTGATGCTTTCCCTCTTGTTTCTGAGATGTCTGTCCAAAGTTCAAAAGAGTACATGCCCATTGATCACGAGGTCCCTTGCATGCCTCCTTGGTTTCTAAATGTTGGCAGTCAAAGATTGTATCTGGCTCTTGCCAGAATTCTTAGACTAACTGGACTATCATTAATGACAGGGAACCGAAGTGATGTATCTCTTTTGAGCCTCCTTGATAATCTGTTGAAACATGTCAGGAAACTTATTTCTGAACTGAGAATGAAAGAATATAAAAAAGATGGCTGTCATCAATCTTGGTATTCCTTGAGTGGTTCAGGGAAGGTTCTACGCCAGGCAAGTACTGCAATTTGTGTTTTAAATGAAATAATTTATGGACTAACAGACCATTCAGTTAATTCTTGGCCGAAGTTGTTTAAGAACAAGACAAAGGCCAAAGTACCAGATAAAACTAAGTTTGTTTGTGATGGTGATCAACTTAATACACCCAGAAGGCTATCCTGGAATGTTCATCAAGGAAAGGAAGCCAGAGAACACATAATTCATTGTGTTGGGAGTATTCTGCATGAGTATACGTCATCTGAAATATGGGATCTCCCTGTAGATCAAGCCGCTCAGTTAGAACAGCATGCAGAAGCAAATCTGTCATTGTTTATTTTCAGGGATGCTAGAATGCTTCACCAGGTTGTCATTGAAGGAATAGGCATCTCTAGTATGGTTATTGGGAAGGATTTTATAAGCAGTGGTTTTATGCATTCAACCTTGTATTTATTGCTTAAAAATCTTATTTGCTCTAATGATCTGATCAGAAGTGCATCTGATACTGCCTTGCATGTTCTTTCTGCTAATACTGCTTATTCTACTGTAGGGCATTTAGTTGTTGCAAATGCGGACTATATTATAGATTCTTTGTGTCGACAATTACGTCATTTGGATCTAAACCCTTATGTTCCTAATGTATTGGCTGCAATGTTATCTTACATTGGAGCTGCTGATGAAATTTTGCCATTGTTGGAGGAGCCAATGCGAGCCGTCTCATCAGAGTTGGAGGTCCTTGGTAGACATCAGCATCCCCATCTAACAATTCCATTTTTAAAGGCAATGAATGAGATTTCAAAGGCTTCAAGATTTGAGTCATGTAGATTGCCTAGTATCGCCAAGTCATTTAATGCACATGTCATGGTGAACGTCTCATCTATTCAAGATTGCGGGAGAAATAGTCTGATAAATATGTCAGGCATTCAAAATCAATTAGAGCACTTGGAGGAACTATTGTTCAAGTTAAACGATATGAGGCGATATCGAAGGACGATTGGGTCTCTGGTATCCTCGTGCATAAAAGCAGCAACTCCTTTGGCAGCTTCACTGGATGAATCAGCTTGTCTATTGGCCCTAGATATTTTGGAGGATGCTATAGTTTGTCTTGCAAAAATTGAGGAAGCCTACAGACAGGAGAAGGAAACTCAATTTGCAATAGGGAAGGCTATACAGTTATGCTCTTTCAATGAATTTGAAGATGAGATGGATGCTCAAAATGATGATGCTGATGAAAACAGATTGCTGCCTGCAGTGAACAAAGTCTGGCCTAATCTGATTCTCTGTCTAAAGAATAAAGTTTCAGTGGCTGTCATCAGAAGATGTGCGGGAGTCGCAAGTCAGACGGTCCAAATAGCCGGAGGAGATTTTTTTGTTCGCCGGTTCCACACAGATGGACCTGTCATCTGGAAACTTCTGAACACTTCTCCATTCCAAAGAAAGCCTTTGTTATCGAAGAACGAGCGCCCCTTCCTCCTCCCGTATCGAAGAAGTTCCCTCACGTCCGAAGATCCAATGGCTGAGACCTCCAGCTTGAAAATTCAGGTAGCAATCCTGAACATGATAGCCGAAATAGCAATGAATACAAGGAGTGCCTCCGCCCTGCAAGCGGTTTTCAATAAGGTGAGTGGTTTGGTTGTAGGGATTGCTTGTAGCAGAGTGACAGGTCTAAGGGAGGCATCCATAAGGGCTCTTTCAGGGCTTGCTGCTATTAATCCGGACACAATTTGGCTCTTTCTGGCTGATGTTTACTACTCGGTGAGGGATAAGGGCATGCCCCGGCCGTCGTGCTTGGAGTTGGCCTCTATCCATGAGCTTTTGCCCCCTCCATTGTCTTCCAAGGACTACCTTTATGTGCAGTATGGTGGGGAGACTTTTGGCTTTGATATTGATCCTGCCTCTGTTGACATGGTGTTTCAGAAGTTGAGTTCTGAGGTATTATTGAACTAAATAGAGCTGCGCAACACTTACTTATGTCTGTATTTATTTATATCTATGTAGTACGTAGAAGAGAAGTTGGATGACTGGATAAGAATAAATTGTGTTTGCTATTGTTATTATTATTATTTTCGTAACTCGAATGTTGTTGGATCTCAAGTTTCAGATGACAAAGGAGGAGGGCTGTGTTTGTTGTTGATAGTTAATGTAAAATTTGTTGAACTCTTATGGCATGAATCCCTTAAAAAA

Network for GWHGAAEX006074

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX006074
MSGVGSNPQNPTNNQNMGKLDGKCGGTPSNETTERVFSRLRIYCTEIFGLTQNPRKKSPSLSEMADFLGRTPDHALQPFLDYSLFPLLLLLDAAVQCRSGQKAKSNCQVITDSVAECTLKCLEELLKKCHLGSVNQMVLVLKKLASGALLLPSEASEEFREGIVKCVKFMLLRLQPCSAGSCSCKEITVFSTLVATLEHCIPNPSCFEESDECLISFLQSKDASAAVGHWLSLLLQTAEAEAARGHQGCATLRKEAYLTLRVLVSKVGTADALAYFLPGTVSCFTRALLATKTMLSGAAGNAGSIEQAVLGLTEFLVIVLRDNANLRGLQMPTSELTCTNQNKNGSSQTVLDLLRHLPATLHKQSEDSACQSDHTLLKDENNVKNHYIFSEARSLYVQRTKTWVDQTSAHVDKLLSATFPHLCVHPAEKVKKAVADSIMSLLSNCSLTLHRSRLMLVECLCVLACDDSEVVSSTAEDSLNSLFMSDKKLFTETDIPELFSSFLEKLPKAIHRSEEIVALSHARRLLALMYYAGPDLVVNHIFCSPMKAAGFLDFLMLSLGHNSQFTGPIDKLISSKSLSIGYLLSVAELKAGSLSSDSSHALRSDAFPLVSEMSVQSSKEYMPIDHEVPCMPPWFLNVGSQRLYLALARILRLTGLSLMTGNRSDVSLLSLLDNLLKHVRKLISELRMKEYKKDGCHQSWYSLSGSGKVLRQASTAICVLNEIIYGLTDHSVNSWPKLFKNKTKAKVPDKTKFVCDGDQLNTPRRLSWNVHQGKEAREHIIHCVGSILHEYTSSEIWDLPVDQAAQLEQHAEANLSLFIFRDARMLHQVVIEGIGISSMVIGKDFISSGFMHSTLYLLLKNLICSNDLIRSASDTALHVLSANTAYSTVGHLVVANADYIIDSLCRQLRHLDLNPYVPNVLAAMLSYIGAADEILPLLEEPMRAVSSELEVLGRHQHPHLTIPFLKAMNEISKASRFESCRLPSIAKSFNAHVMVNVSSIQDCGRNSLINMSGIQNQLEHLEELLFKLNDMRRYRRTIGSLVSSCIKAATPLAASLDESACLLALDILEDAIVCLAKIEEAYRQEKETQFAIGKAIQLCSFNEFEDEMDAQNDDADENRLLPAVNKVWPNLILCLKNKVSVAVIRRCAGVASQTVQIAGGDFFVRRFHTDGPVIWKLLNTSPFQRKPLLSKNERPFLLPYRRSSLTSEDPMAETSSLKIQVAILNMIAEIAMNTRSASALQAVFNKVSGLVVGIACSRVTGLREASIRALSGLAAINPDTIWLFLADVYYSVRDKGMPRPSCLELASIHELLPPPLSSKDYLYVQYGGETFGFDIDPASVDMVFQKLSSEVLLN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20403	TTI1	mTOR signaling pathway	map04150

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.200
SRP064423	SRR2545915	Juvenile tuber	25.390
SRP108465	SRR5643513	five period of Gastrodia elata	24.270
	SRR5643514	five period of Gastrodia elata	26.440
	SRR5643515	five period of Gastrodia elata	26.570
	SRR5643524	five period of Gastrodia elata	25.770
	SRR5643525	five period of Gastrodia elata	26.310
	SRR5643528	five period of Gastrodia elata	24.090
	SRR5643658	five period of Gastrodia elata	23.620
	SRR5643659	five period of Gastrodia elata	30.270
	SRR5643660	five period of Gastrodia elata	32.500
	SRR5643661	five period of Gastrodia elata	28.160
	SRR5643662	five period of Gastrodia elata	27.000
	SRR5643663	five period of Gastrodia elata	32.840
	SRR5643664	five period of Gastrodia elata	31.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	26.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	25.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.670
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.240
SRP279888	Gastro	Gastrodia elata tuber	27.57
	Juven	Juvenile tuber	28.79
	Mother_Gastro	Mother tuber of Gastrodia elata	27.68
	Mother_Juven	Mother tuber of Juvenile	33.08