Detail information of GWHGAAEX006076/evm.TU.scaffold_177.46


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|268317165|ref|YP_003290884.1|9.00E-12Superoxide dismutase [Rhodothermus marinus DSM 4252]
KOGKOG46563.00E-105Copper chaperone for superoxide dismutase
nrgi|697356236|gb|AIT56197.1|4.41E-133copper chaperone superoxide dismutase [Musa acuminata AAA Group]
Swissprottr|Q7XTY9|CCS_ORYSJ6.00E-123Copper chaperone for superoxide dismutase, chloroplastic (Precursor)
trEMBLtr|A0A097I4X4|A0A097I4X4_MUSAC2.00E-133Copper chaperone superoxide dismutase {ECO:0000313|EMBL:AIT56198.1}
TAIRAT1G125203.00E-105copper chaperone for SOD1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000185872158891484+
Transcript Sequence

Network for GWHGAAEX006076

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00403.25HMA1011531.20E-09
PF00080.19Sod_Cu1812861.00E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0030001Biological Processmetal ion transport
GO:0006801Biological Processsuperoxide metabolic process
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.170
SRR2545915Juvenile tuber37.910
SRP108465SRR5643513five period of Gastrodia elata54.330
SRR5643514five period of Gastrodia elata60.050
SRR5643515five period of Gastrodia elata57.570
SRR5643524five period of Gastrodia elata56.200
SRR5643525five period of Gastrodia elata50.740
SRR5643528five period of Gastrodia elata61.850
SRR5643658five period of Gastrodia elata64.680
SRR5643659five period of Gastrodia elata41.580
SRR5643660five period of Gastrodia elata42.770
SRR5643661five period of Gastrodia elata45.040
SRR5643662five period of Gastrodia elata58.600
SRR5643663five period of Gastrodia elata53.710
SRR5643664five period of Gastrodia elata56.940
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_147.250
SRR6049655Rhizomagastrodiae_C368-T10_good_132.890
SRR6049656Rhizomagastrodiae_C368-T07_good_150.520
SRR6049657Rhizomagastrodiae_C368-T07_good_144.120
SRR6049658Rhizomagastrodiae_C368-T04_good_144.180
SRR6049659Rhizomagastrodiae_C368-T04_good_142.530
SRR6049660Rhizomagastrodiae_C368-T01_good_138.980
SRR6049661Rhizomagastrodiae_C368-T04_good_138.470
SRR6049662Rhizomagastrodiae_C368-T01_good_150.320
SRR6049663Rhizomagastrodiae_C368-T01_good_138.910
SRR6049664Rhizomagastrodiae_C368-T10_good_148.940
SRR6049665Rhizomagastrodiae_C368-T10_good_148.940
SRP279888GastroGastrodia elata tuber 66.35
JuvenJuvenile tuber61.53
Mother_GastroMother tuber of Gastrodia elata 45.83
Mother_JuvenMother tuber of Juvenile 47.25