Detail information of GWHGAAEX006083/evm.TU.scaffold_177.54
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1640 | 2.00E-117 | Predicted steroid reductase |
| nr | gi|672115160|ref|XP_008779870.1| | 4.51E-165 | PREDICTED: polyprenol reductase 1 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q7XUH5|POED1_ORYSJ | 7.00E-128 | Polyprenol reductase 1 |
| trEMBL | tr|M0SXB1|M0SXB1_MUSAM | 4.00E-146 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P10320_001} |
| TAIR | AT2G16530 | 2.00E-117 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000185 | 1053177 | 1106605 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006083
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02544.15 | Steroid_dh | 238 | 350 | 1.70E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12345 | SRD5A3 | Steroid hormone biosynthesis | map00140 |
| N-Glycan biosynthesis | map00510 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006629 | Biological Process | lipid metabolic process |
| GO:0016627 | Molecular Function | oxidoreductase activity, acting on the CH-CH group of donors |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.090 |
| SRR2545915 | Juvenile tuber | 82.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.530 |
| SRR5643514 | five period of Gastrodia elata | 18.730 | |
| SRR5643515 | five period of Gastrodia elata | 20.590 | |
| SRR5643524 | five period of Gastrodia elata | 18.060 | |
| SRR5643525 | five period of Gastrodia elata | 17.920 | |
| SRR5643528 | five period of Gastrodia elata | 16.590 | |
| SRR5643658 | five period of Gastrodia elata | 14.840 | |
| SRR5643659 | five period of Gastrodia elata | 81.820 | |
| SRR5643660 | five period of Gastrodia elata | 80.350 | |
| SRR5643661 | five period of Gastrodia elata | 103.270 | |
| SRR5643662 | five period of Gastrodia elata | 124.890 | |
| SRR5643663 | five period of Gastrodia elata | 111.750 | |
| SRR5643664 | five period of Gastrodia elata | 110.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.950 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 101.76 |
| Juven | Juvenile tuber | 34.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.10 | |
| Mother_Juven | Mother tuber of Juvenile | 24.18 |